Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19860 191 / 3e-62 Protein of unknown function, DUF538 (.1) AT1G55265 120 / 2e-34 Protein of unknown function, DUF538 (.1) AT3G07470 103 / 4e-28 Protein of unknown function, DUF538 (.1) AT5G54530 94 / 1e-24 Protein of unknown function, DUF538 (.1) AT3G07460 92 / 2e-23 Protein of unknown function, DUF538 (.1.2) AT1G61667 90 / 5e-23 Protein of unknown function, DUF538 (.1) AT5G16380 83 / 6e-20 Protein of unknown function, DUF538 (.1) AT1G02816 70 / 4e-15 Protein of unknown function, DUF538 (.1) AT4G02360 66 / 7e-14 Protein of unknown function, DUF538 (.1) AT1G02813 59 / 2e-11 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039187 [exp] 288 / 9e-101 AT5G19860 190 / 4e-62 Protein of unknown function, DUF538 (.1) Lus10013756 [exp] 110 / 8e-31 AT1G55265 137 / 2e-41 Protein of unknown function, DUF538 (.1) Lus10039182 [exp] 110 / 1e-30 AT1G55265 135 / 1e-40 Protein of unknown function, DUF538 (.1) Lus10029538 [exp] 99 / 5e-26 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 98 / 2e-25 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 97 / 5e-25 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 95 / 1e-24 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 95 / 2e-24 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10019216 [exp] 94 / 3e-24 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G008400 [exp] 217 / 1e-72 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 189 / 9e-62 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 125 / 1e-36 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 122 / 2e-35 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 117 / 2e-33 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 105 / 2e-28 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 102 / 1e-27 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 88 / 5e-22 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 86 / 4e-21 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 76 / 2e-17 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10013752 pacid=23169063 polypeptide=Lus10013752 locus=Lus10013752.g ID=Lus10013752.BGIv1.0 annot-version=v1.0 ATGGCGTCGTTAATGCCTGAACTTGTCTCTCTGTTCCTCCTCGTCCTTTCTATTTCAAGCGGCCAAGTACTCTCCGTCTCCGACGACGATCCTGCTGCTT CCGTCTACGAAATCCTGCCCAAGTACGGACTCCCCAGCGGGCTGTTACCCGATTCGGTCGTCTCCTACACGCTCGACGACGACGGCAATTTCGCCGTGTC TCTGCAGAAGCCCTGTTACATACAGTTCGATTACTTGGTTTATTACGAGGAGAATATCACCGGGAAGCTGAGCTTGGGGTCGATTACGGATCTGAAAGGG ATTCAGGTCCAGAAGTTCTTCATCTGGCTGGATGTCGACGAGATCAAGGTCGATTTGCCTCCTGCTGGTTCGATTTACTTCCATGTCGGGTTTATCAACA AGAAGCTTGATGTGAACCAGTTCGAGACTGTACATTCTTGCCAAGACGGGGTCACTGGATCGCCCTGTAAAGGGCTTTGGAAGCGTGTTCTTGAGTTGTT CTTGAGAATGTTTAAAGATTATACTTTTCCTATGCGGGCTATGGTTGAAGGAGGATGGCTTTAG
AA sequence Show only first row Show all	>Lus10013752 pacid=23169063 polypeptide=Lus10013752 locus=Lus10013752.g ID=Lus10013752.BGIv1.0 annot-version=v1.0 MASLMPELVSLFLLVLSISSGQVLSVSDDDPAASVYEILPKYGLPSGLLPDSVVSYTLDDDGNFAVSLQKPCYIQFDYLVYYEENITGKLSLGSITDLKG IQVQKFFIWLDVDEIKVDLPPAGSIYFHVGFINKKLDVNQFETVHSCQDGVTGSPCKGLWKRVLELFLRMFKDYTFPMRAMVEGGWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19860			Protein of unknown function, D...		Lus10013752 [exp]	0	1
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10030115 [exp]	4.4	0.8686
AT3G49800			BSD domain-containing protein ...		Lus10019271 [exp]	4.9	0.8550
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	6.6	0.8684
AT1G26160			Metal-dependent phosphohydrola...		Lus10017897 [exp]	8.0	0.8090
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	10.4	0.8615
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	10.6	0.8307
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10038691 [exp]	11.2	0.8451
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	11.5	0.8684
					Lus10041517 [exp]	12.2	0.8418
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	14.1	0.8248

Compare expression of checked genes

Lus10013752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.