Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17230 441 / 4e-154 PSY PHYTOENE SYNTHASE (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039186 [exp] 719 / 0 AT5G17230 442 / 1e-154 PHYTOENE SYNTHASE (.1.2.3) Lus10001416 [exp] 426 / 2e-148 AT5G17230 545 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10001050 [exp] 418 / 3e-145 AT5G17230 535 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10020729 [exp] 394 / 3e-136 AT5G17230 491 / 7e-174 PHYTOENE SYNTHASE (.1.2.3) Lus10029809 [exp] 387 / 4e-132 AT5G17230 491 / 3e-172 PHYTOENE SYNTHASE (.1.2.3) Lus10014576 [exp] 102 / 4e-27 AT5G17230 69 / 1e-15 PHYTOENE SYNTHASE (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007700 [exp] 508 / 0 AT5G17230 443 / 4e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G217950 [exp] 491 / 2e-174 AT5G17230 443 / 5e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G218000 [exp] 451 / 1e-158 AT5G17230 411 / 2e-142 PHYTOENE SYNTHASE (.1.2.3) Potri.017G138900 [exp] 438 / 7e-153 AT5G17230 630 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.002G056800 [exp] 435 / 7e-152 AT5G17230 555 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.005G205800 [exp] 432 / 1e-150 AT5G17230 549 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081466 [exp] 218 / 3e-70 AT5G17230 260 / 9e-87 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081433 [exp] 70 / 6e-14 AT5G17230 144 / 2e-41 PHYTOENE SYNTHASE (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00494 [flax] [poplar] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Lus10013753 pacid=23169145 polypeptide=Lus10013753 locus=Lus10013753.g ID=Lus10013753.BGIv1.0 annot-version=v1.0 ATGATGATAGACAGAGGAATAATTAGTACTACAAGTGATCATCATCATCATCAGTCGTCTGCTAATGTTGTAAGAAGAAGAGGAGAAGCTGTGATTACGA ACGTAATCGCGGTCCCTAAACAGAAGGGACAGATGTCCTCGTCGAGGAGGATGTCCTCGACGACGTTGCTGAAAGAGCTGGGAATTCCTCTAGGTATGGA CGAGATCGTGGAGAAGCAGCAGTATTGTTACGGTGGTGGCAGTGAAAGGAAAAGCCCGAAATTCAGTAGTGGGTTTCTTGACGAGTCGTATGATAGGTGC AGGGACATTTGCGCTGAATATGCCAAGACTTTCTACCTCGGAACTAGGCTAATGACAGAGGAGAGAAGAAAGGCGATATGGGCAATCTATGTGTGGTGCA GAAGAACAGACGAGCTAGTGGACGGACCGAACGCAGAGTACATGACGACCAACTCGAAAGCGTTGGATAGATGGGAAGAGAGACTTGAAGACATATTCAA CGGCCGCCCTTACGACCTCCTCGATGCTGCTCTTACCGACACCATCTCCAACTTCCCCCTCGACATCAAGCCGTTCAGGGACATGATCCAAGGGATGAGA ATGGACACGTGGAAATCCCGGTACGACAACTTCCAGGAACTGTATCTTTACTGCTACTACGTCGCCGGCACGGTGGGGCTGATGAGTGTTCCGGTGATGG GTATCTCTCCTCAATCCTCTGTTTCCGTTCAGACGATCTACGACGGAGCTCTCTACTTGGGGATTGGGAATCAACTTACTAACATCCTTAGAGATGTCGG CGAAGATGCATCAAGAGGGAGAGTATATCTACCTCAGGATGAGCTTGCCCAATTTGGTATATCGGAAAAAGATGTGCTATCAAGGAAAGTCACAGAAGGT TGGAGGGAGTTCATGAGAGCTCAGATCACTAGGGCAAGATCCTACTTCAACCTAGCCGAGGAAGGTGCCTCCCACCTCGATGATGCTAGCCGTTGGCCGG TGTGGACAGCTCTGTTGGTGTATAGAGAGATATTGGACGAGATCGAAGAGAATGATTACGACAACTTGAACAAGAGAGCTTATGTTGGGAAGGTCAAGAA GCTCCTCATGTTGCCATTGGCTTATAGTAGAGCTCAATTCCGACCACCTACCTTGCTTCTTTCATGA
AA sequence Show only first row Show all	>Lus10013753 pacid=23169145 polypeptide=Lus10013753 locus=Lus10013753.g ID=Lus10013753.BGIv1.0 annot-version=v1.0 MMIDRGIISTTSDHHHHQSSANVVRRRGEAVITNVIAVPKQKGQMSSSRRMSSTTLLKELGIPLGMDEIVEKQQYCYGGGSERKSPKFSSGFLDESYDRC RDICAEYAKTFYLGTRLMTEERRKAIWAIYVWCRRTDELVDGPNAEYMTTNSKALDRWEERLEDIFNGRPYDLLDAALTDTISNFPLDIKPFRDMIQGMR MDTWKSRYDNFQELYLYCYYVAGTVGLMSVPVMGISPQSSVSVQTIYDGALYLGIGNQLTNILRDVGEDASRGRVYLPQDELAQFGISEKDVLSRKVTEG WREFMRAQITRARSYFNLAEEGASHLDDASRWPVWTALLVYREILDEIEENDYDNLNKRAYVGKVKKLLMLPLAYSRAQFRPPTLLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10013753 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10025692 [exp]	1.0	0.9995
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	8.5	0.9910
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005238 [exp]	9.4	0.9656
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	10.4	0.9910
AT4G08630			unknown protein		Lus10004138 [exp]	10.5	0.9247
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	12.0	0.9910
					Lus10024141 [exp]	13.4	0.9910
					Lus10013255 [exp]	14.7	0.9910
					Lus10013259 [exp]	15.9	0.9910
AT4G16050			Aminotransferase-like, plant m...		Lus10043051 [exp]	16.4	0.8538

Compare expression of checked genes

Lus10013753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.