Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58500 601 / 0 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT2G42500 600 / 0 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT1G10430 513 / 0 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 510 / 0 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G69960 507 / 0 PP2A serine/threonine protein phosphatase 2A (.1) AT4G26720 421 / 1e-149 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 416 / 2e-147 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT3G19980 361 / 5e-126 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G50370 360 / 1e-125 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G29400 290 / 8e-98 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039185 [exp] 615 / 0 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10025174 [exp] 609 / 0 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016053 [exp] 601 / 0 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10042160 [exp] 525 / 0 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 520 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10036657 [exp] 513 / 0 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 512 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 512 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10004252 [exp] 484 / 2e-168 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007800 [exp] 611 / 0 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.003G217900 [exp] 611 / 0 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 590 / 0 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.006G196100 [exp] 588 / 0 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.015G068300 [exp] 525 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 524 / 0 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 509 / 0 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 508 / 0 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.011G092200 [exp] 411 / 7e-146 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 410 / 2e-145 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10013754 pacid=23169156 polypeptide=Lus10013754 locus=Lus10013754.g ID=Lus10013754.BGIv1.0 annot-version=v1.0 ATGCAGTGCAAGCCCTTATCCGAACAAGATGTTCGGGGGCTATGTGAAAAGGCAAAGGAAATTCTGATGGACGAAAGCAATGTCCAGCCCGTGAAAAGCC CGGTTACAATCTGTGGTGACATCCATGGACAATTCCATGATCTTGCAGAGCTATTTCGCATTGGAGGAAAGTGCCCGGATACAAATTACTTGTTCATGGG AGACTATGTGGATCGTGGGTACTACTCTGTTGAAACTGTGACACTGCTGGTTTCCTTGAAAGTACGTTATCCTCAAAGAATTACCATTTTAAGAGGAAAC CATGAGAGTCGTCAGATTACTCAAGTTTATGGATTTTACGATGAGTGCCTGAGGAAGTATGGGAATGCAAATGTGTGGAAGATCTTTACAGATCTTTTTG ATTATTTTCCGCTCACAGCACTGGTCGAGTCCGAGATTTTTTGTCTTCATGGTGGTTTGTCCCCTTCCATTGAAACATTGGACAACATTCGGAACTTTGA CCGCGTGCAAGAAGTTCCGCACGAGGGTCCCATGTGTGATCTTTTGTGGTCCGACCCTGATGACCGATGTGGTTGGGGTATTTCACCTCGGGGAGCAGGG TATACCTTTGGTCAGGATATTTCTGAGCAGTTCAACCATACTAACAACCTAAAGCTGATTGCAAGAGCTCATCAGCTGGTCATGGAAGGCTACAACTGGG GTCATGATCAAAAGGTGGTTACCATATTCAGTGCACCAAATTATTGCTACCGCTGTGGAAACATGGCGTCTATTTTGGAAGTTGACGATTGCAAGGGTCA TACGTTCATCCAGTTCGAGCCGGCTCCTAGAAGGGGAGAACCCGACGTAACCAGGAGAACGCCTGATTACTTCCTATAA
AA sequence Show only first row Show all	>Lus10013754 pacid=23169156 polypeptide=Lus10013754 locus=Lus10013754.g ID=Lus10013754.BGIv1.0 annot-version=v1.0 MQCKPLSEQDVRGLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGN HESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAG YTFGQDISEQFNHTNNLKLIARAHQLVMEGYNWGHDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10013754 [exp]	0	1
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	2.4	0.8404
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	3.3	0.8595
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10015457 [exp]	5.3	0.8261
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	5.7	0.8256
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	7.7	0.8294
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10009294 [exp]	12.0	0.7953
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	12.5	0.8192
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	12.8	0.8173
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030568 [exp]	13.5	0.7943
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	14.7	0.8076

Compare expression of checked genes

Lus10013754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.