Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55265 136 / 3e-41 Protein of unknown function, DUF538 (.1) AT5G19860 105 / 7e-29 Protein of unknown function, DUF538 (.1) AT1G02813 88 / 2e-22 Protein of unknown function, DUF538 (.1) AT5G54530 86 / 9e-22 Protein of unknown function, DUF538 (.1) AT1G61667 86 / 9e-22 Protein of unknown function, DUF538 (.1) AT3G07470 79 / 1e-18 Protein of unknown function, DUF538 (.1) AT3G07460 76 / 1e-17 Protein of unknown function, DUF538 (.1.2) AT5G16380 75 / 5e-17 Protein of unknown function, DUF538 (.1) AT4G02360 65 / 1e-13 Protein of unknown function, DUF538 (.1) AT5G19590 50 / 5e-08 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039182 [exp] 318 / 4e-113 AT1G55265 135 / 1e-40 Protein of unknown function, DUF538 (.1) Lus10013752 [exp] 110 / 6e-31 AT5G19860 194 / 1e-63 Protein of unknown function, DUF538 (.1) Lus10039187 [exp] 109 / 2e-30 AT5G19860 190 / 4e-62 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 90 / 2e-22 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 89 / 3e-22 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10019216 [exp] 82 / 8e-20 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 81 / 3e-19 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 81 / 3e-19 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 79 / 8e-19 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G008240 [exp] 172 / 2e-55 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 168 / 8e-54 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 167 / 9e-54 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 117 / 2e-33 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 115 / 5e-33 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 88 / 2e-22 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 83 / 2e-20 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 82 / 5e-20 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 78 / 3e-18 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 72 / 3e-16 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10013756 pacid=23169150 polypeptide=Lus10013756 locus=Lus10013756.g ID=Lus10013756.BGIv1.0 annot-version=v1.0 ATGGCGATCACTCTCCATCTCCGCATCTCCACTTATCCATCTCTCTTCATCCTGCTCTTCCTCTGCAGCATCAAGTTCGATCCGACACTCTGCCTCCCTC AATCCAAACTATCGGACATCCATGATCTCATGCCTCAATACGGCCTCCCGCGGGGCCTTCTCCCCGACGGCATTCAGTCATACACCCTCTCACCTTCCGA CGGATCCTTCACCGTCCTTCTCAAAACCACTTGCTACGTCCACTTCGGCGACCACCTCGTCTACTACAACAAGCAGATCGGAGGCAAGCTCAGCTACGGC GCCGTCAGCGATGCCAGCGGGATCCAGGCCAAAAAGGGGTTCTTGTGGCTTCCCGTGACTTCGATCGAGGTCGGTAAAGACGGTGACGGCACGATTCAGT TCTTCGTCGGTCCCTTCTCGGAGAAATTGTCGCTGGATTTGTTCAAGAATGTTCCTCAGTGTAAAAGCAAAGCAGCTCTCTGGAGGCCTCTCTTGGAATC GATCTGA
AA sequence Show only first row Show all	>Lus10013756 pacid=23169150 polypeptide=Lus10013756 locus=Lus10013756.g ID=Lus10013756.BGIv1.0 annot-version=v1.0 MAITLHLRISTYPSLFILLFLCSIKFDPTLCLPQSKLSDIHDLMPQYGLPRGLLPDGIQSYTLSPSDGSFTVLLKTTCYVHFGDHLVYYNKQIGGKLSYG AVSDASGIQAKKGFLWLPVTSIEVGKDGDGTIQFFVGPFSEKLSLDLFKNVPQCKSKAALWRPLLESI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55265			Protein of unknown function, D...		Lus10013756 [exp]	0	1
AT2G01990			unknown protein		Lus10013793 [exp]	3.0	0.8397
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10030398 [exp]	9.9	0.8452
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10011375 [exp]	10.3	0.8828
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	15.6	0.8736
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10019847 [exp]	20.3	0.8285
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10042185 [exp]	23.7	0.8330
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10009127 [exp]	27.5	0.8086
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	28.8	0.8325
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	29.9	0.8219
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	35.9	0.8320

Compare expression of checked genes

Lus10013756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.