Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13560 567 / 0 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G01630 430 / 2e-147 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 394 / 3e-133 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 393 / 1e-132 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 306 / 2e-99 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 301 / 1e-97 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 298 / 3e-96 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 294 / 3e-94 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 293 / 7e-94 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G34480 262 / 7e-82 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039179 [exp] 822 / 0 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10034607 [exp] 441 / 7e-152 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 441 / 7e-152 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10013465 [exp] 439 / 5e-151 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 420 / 4e-143 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 417 / 4e-142 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031456 [exp] 392 / 8e-132 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 307 / 1e-99 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004391 [exp] 301 / 2e-97 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218500 [exp] 613 / 0 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 610 / 0 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.010G108500 [exp] 452 / 6e-156 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.017G130200 [exp] 437 / 4e-150 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 436 / 2e-149 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G133200 [exp] 433 / 1e-148 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 404 / 1e-136 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 389 / 7e-131 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G094400 [exp] 313 / 7e-102 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G068600 [exp] 307 / 2e-99 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10013758 pacid=23169137 polypeptide=Lus10013758 locus=Lus10013758.g ID=Lus10013758.BGIv1.0 annot-version=v1.0 ATGCCGCCCGCATCGGACATTGTCATGATGCTTAAAGATAAAGACATAACACATGTACGCCTATACGATGCGGATTCTCACATGTTAAGGGCACTCGCAA ACAGCAGTATCGAAGTAATGGTCGGAGTAACTAACGAGGAAGTCCTAATGATCGGAGAATCTCCAGCAGCGGCTGCTTCATGGATCAACAAAAACATAGC AGCTTATTTGCCTTCAACCAACATCACAGCCATAGCAGTTGGAAGCGAGGTTCTTACTTCGGTACCGAATTTATCCCCTGTCCTGGTTCCTTCCATGCAG TATCTTCACAAAGCACTCGTTGCTTCGAATCTAAACTATCAGATCAAGGTCTCAACTCCTCAAGCTATGGACATTATCCCCAAGCCGTTCCCGCCTTCTA CTGCAACCTTCACTAATGGGAACAACACAATTTATCAGCTCCTTCAGTTTCTGAAGAACACCAACTCATACTTCATGTTGAATGCATATCCTTATTATGG ATACACTACCGGAAATGGCATCTTCCCGCTCGATTACGCTTTGTTCCAACCACTCGCTTCGGTCAAGCAGATTCTCGACCCGAACACTTTACTCCACTAC GACAGCATGTTTGATGCAATGGTGGATGCTGCTTATTATGCGATGGATGCTCTCAATTTCTCCGGAATCCCTGTTGTTGTTACTGAAACAGGCTGGCCTA CTCTTGGCGGGGCGAAAGAGCCTGATGCCACGGTCGAGAATGCAGGGAAGTATATTAGTAGTCTGATCCAAAGGGTTCATAATGATTCGGGGCCTCCTAG TCATCCAAGCATTCCCATTAACACGTACATATACGAGCTTTTCAATGAAGACAAGAGACCGGGACCTGAGTCGGAGAAGAATTGGGGGCTGTATTCTCCC AATGGTACTGCTGTTTATTCTCTTAGTTTGAACGGTTCGGATGGTGTGATGTCTGGGAATTCGACTGGTGGTATGTTTTGTGTTGCGAAATCGAATGCAG ACCCTGATAAGCTGAAAGCAGGACTTGACTGGGCTTGTGGGCAAGGTGGAGCTAATTGTGCACCTGTGCAAAAGGGTAGACCGTGTTTTCAACCTGATAG TTACCAAAATCATGCTTCTTTTGCATTTAACGATTATTATCAGAAGATGCACGGTGCTGGTGCGACGTGTGATTTTGATGGAACCGCATCAATAACAAAA GTTGATCCCAGAGCTGACATTTCTGCTGAGGTTGGTTCTGATTTGTTAAGTTTTGTTTACTTTTGGACCAGTTCGAATTCGAGTGGAGGAGGGGATATGT TCTCACCGACAGCATTCGGACCTGTGAGTCCTCAGTTTGGCACGAGCCTCAAGTTGGTGGCTTCTCGAAGCCGGGTTGCAGTACCAGCAGCAGTTCTTGG GTTGGTGTTCTTAGTTTGA
AA sequence Show only first row Show all	>Lus10013758 pacid=23169137 polypeptide=Lus10013758 locus=Lus10013758.g ID=Lus10013758.BGIv1.0 annot-version=v1.0 MPPASDIVMMLKDKDITHVRLYDADSHMLRALANSSIEVMVGVTNEEVLMIGESPAAAASWINKNIAAYLPSTNITAIAVGSEVLTSVPNLSPVLVPSMQ YLHKALVASNLNYQIKVSTPQAMDIIPKPFPPSTATFTNGNNTIYQLLQFLKNTNSYFMLNAYPYYGYTTGNGIFPLDYALFQPLASVKQILDPNTLLHY DSMFDAMVDAAYYAMDALNFSGIPVVVTETGWPTLGGAKEPDATVENAGKYISSLIQRVHNDSGPPSHPSIPINTYIYELFNEDKRPGPESEKNWGLYSP NGTAVYSLSLNGSDGVMSGNSTGGMFCVAKSNADPDKLKAGLDWACGQGGANCAPVQKGRPCFQPDSYQNHASFAFNDYYQKMHGAGATCDFDGTASITK VDPRADISAEVGSDLLSFVYFWTSSNSSGGGDMFSPTAFGPVSPQFGTSLKLVASRSRVAVPAAVLGLVFLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	0	1
AT1G77270			unknown protein		Lus10038311 [exp]	1.4	0.9273
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10043178 [exp]	2.0	0.9225
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10043286 [exp]	5.5	0.8850
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	6.7	0.9087
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	7.7	0.8983
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	7.7	0.8972
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	7.7	0.9032
AT1G54385			ARM repeat superfamily protein...		Lus10020266 [exp]	8.5	0.8949
AT1G17820			Putative integral membrane pro...		Lus10036188 [exp]	8.6	0.8805
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	11.7	0.8823

Compare expression of checked genes

Lus10013758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.