Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13600 687 / 0 calmodulin-binding family protein (.1) AT3G58480 516 / 1e-177 calmodulin-binding family protein (.1) AT2G26190 409 / 1e-136 calmodulin-binding family protein (.1) AT4G33050 401 / 4e-134 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT3G52870 394 / 8e-132 IQ calmodulin-binding motif family protein (.1) AT5G57010 372 / 8e-123 calmodulin-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039178 [exp] 1196 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 739 / 0 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 731 / 0 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10003257 [exp] 430 / 6e-146 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 426 / 9e-144 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10029324 [exp] 419 / 3e-141 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10016219 [exp] 421 / 2e-140 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10013526 [exp] 401 / 8e-133 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 395 / 8e-131 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218800 [exp] 745 / 0 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 720 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 560 / 0 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 543 / 0 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 455 / 4e-157 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.018G061901 [exp] 450 / 2e-152 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 429 / 4e-144 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G226400 [exp] 424 / 3e-142 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G114700 [exp] 421 / 4e-142 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.006G226500 [exp] 315 / 2e-102 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013759 pacid=23169146 polypeptide=Lus10013759 locus=Lus10013759.g ID=Lus10013759.BGIv1.0 annot-version=v1.0 ATGGGAATTTCGTTATCGTGCCCATTTGGAAACGCTGTAGAGAATCTACTGGAATCAGTGGTTGTGAAATCCATCAGCTTCGGAGACGATGAAGAAGCCA AGACACCTGTACGTTCTGTGAGCTTCGGGAAATCAGATTCGGAGCCCACAATATCGTCCAAGTCTGGAGAAATGGTGGTGGTTGAAAGATCCGTGAGCTT GAAAGGGCTCGAGTTTGACAAGCTGATGATGAACTCCAATATGGAAAATCAACATAAAGATGGTACATTGTTACTCGAGGAGATGATTCAGATGCCTGAG AAGAAGCTTCCGGTTTTCGATCCGGCCAACCCCAAGCACCAAGCTGCTGTGAAGTTGCAGAAGGTTTACAAGAGCTTCAGAACCAGGAGAAAGCTTGCCG ATTGCGCTGTCCTTGTTGAGCAAAGCTGGTGGAAGCTCTTGGATTTCGCTGAGCTCAAGCATAGCTCCATCTCTTTTTTCGACATTGAGAAGCACGAGAC CGCCATGTCGCGCTGGTCCAGAGCTAGAACTAGAGCTGCCAAGGTTGGGAAAGGGTTGTCCAAGAATGGCAAGGCTCAGAAGCTTGCTCTCCAGCATTGG CTTGAAGCTATTGACCCAAGGCATCGATATGGCCATAACCTTCATTTCTATTATGACAACTGGCTTCATTCCAAGAGCAGGGAGCCTTTCTTTTACTGGC TGGACATAGGTGAAGGAAAGGAAGTTAACATTGTTGAGAAATGCCCACGGTGGAAGCTACAACAGCAATGCATCAAGTATCTTGGTCCAATGGAAAGGAA GGCGTATGAAGTTGTGGTTGAAGATGGGAAATTGATGTACAAGGAAACTGGGGAGTTCCTTAACACAACTGGCGATTCCAAGTGGATATTTGTTCTTAGT ACTTCTAAGAACTTGTATGTTGGTCAGAAGAAGAAGGGTCAGTTTCAGCACTCTAGCTTTTTGGCTGGAGGTGTCACCACTGCTGCTGGAAGGTTGATTG CTGAGGAAGGTGGGCTATATGTCCTAAAGGCAGTTTGGCCTCACAGTGGTCATTATCGGCCTACGGAGGAGAATTTCCGAGACTTCCTTTTGTTCCTCGT GGAAAACAATGTTGATGTCACAGATGTTAAGACAAGTCCTGTGGATGAGGAAGACGGTTCGCTATCAAAACAAAGAAGCAGTAAACATCTTCGAAACCAT TCTGAAGACGACTTCATCGAAACAGTCGACGAGAACTTGACTACATTAATTATCAGCAACCCTGTCGACTTAGTGCAAGAAGAGGAGGTTTTATCTAGTG CAGCAGAAGAAAAACACAAGCCAGAAGGCCTAGGTAACTTCAGCAAGAAGTTAGCCAGCCTTGAAATTCCTGAGAGGGATGATCAATTGTTTCACTGGAG TGATCCTAGCCAGCATTTGGTCGAAAATGGCTACGAATCCGCAGACGAAGAGGCGGCTGATGATGGAGAAGGAGGGGAGGAGGTAGTTCCTCAAGAAGCG ATCTTGGAGAGGATCAATTCGAAGAAGGGGATGAAGTCTTATCAACTAGGAAGGCAACTGTCCTGCAAATGGACAACAGGAGCAGGACCTCGAATCGGGT GCGTTAGAGACTACCCTTCGGAGCTGCAGTTCAGGGCTCTGGATCAAGTGAACTTGTCTCCGAGGTGCGCTACTAGTACTCCTTCGAGCCGAGGATTGTC TTTGCCTGCCGGTTATGGCATCGAAGGCCTGATGGCGACTACTACTGCAACAGTCGAGTCGCCATCGTGCTCGAGGCTGAACCGGTTCATGAGTCAAAGC TTGCCCTTTTCGAGTAGAACACAATGCTCGTCGCCATTGTCGTTAGCCATGACCGAATGA
AA sequence Show only first row Show all	>Lus10013759 pacid=23169146 polypeptide=Lus10013759 locus=Lus10013759.g ID=Lus10013759.BGIv1.0 annot-version=v1.0 MGISLSCPFGNAVENLLESVVVKSISFGDDEEAKTPVRSVSFGKSDSEPTISSKSGEMVVVERSVSLKGLEFDKLMMNSNMENQHKDGTLLLEEMIQMPE KKLPVFDPANPKHQAAVKLQKVYKSFRTRRKLADCAVLVEQSWWKLLDFAELKHSSISFFDIEKHETAMSRWSRARTRAAKVGKGLSKNGKAQKLALQHW LEAIDPRHRYGHNLHFYYDNWLHSKSREPFFYWLDIGEGKEVNIVEKCPRWKLQQQCIKYLGPMERKAYEVVVEDGKLMYKETGEFLNTTGDSKWIFVLS TSKNLYVGQKKKGQFQHSSFLAGGVTTAAGRLIAEEGGLYVLKAVWPHSGHYRPTEENFRDFLLFLVENNVDVTDVKTSPVDEEDGSLSKQRSSKHLRNH SEDDFIETVDENLTTLIISNPVDLVQEEEVLSSAAEEKHKPEGLGNFSKKLASLEIPERDDQLFHWSDPSQHLVENGYESADEEAADDGEGGEEVVPQEA ILERINSKKGMKSYQLGRQLSCKWTTGAGPRIGCVRDYPSELQFRALDQVNLSPRCATSTPSSRGLSLPAGYGIEGLMATTTATVESPSCSRLNRFMSQS LPFSSRTQCSSPLSLAMTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58480			calmodulin-binding family prot...		Lus10013759 [exp]	0	1
AT1G16670			Protein kinase superfamily pro...		Lus10023510 [exp]	1.4	0.9737
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10006105 [exp]	2.6	0.9768
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	9.2	0.9586
AT4G33050		EDA39	embryo sac development arrest ...		Lus10014872 [exp]	9.2	0.9638
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024076 [exp]	9.5	0.9602
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10000242 [exp]	9.6	0.9518
AT1G65820			microsomal glutathione s-trans...		Lus10007375 [exp]	9.6	0.9553
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	10.2	0.9617
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	10.2	0.9655
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	11.7	0.9695

Compare expression of checked genes

Lus10013759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.