Plant FIBer expression Database

Lus10013760 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54250 230 / 1e-78 NRPE8A, NRPB8A, ATRPABC16.5 RNA polymerase Rpb8 (.1)
AT3G59600 224 / 2e-76 NRPE8B, NRPD8B, NRPB8B RNA polymerase Rpb8 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039177
[exp]
308 / 1e-109 AT1G54250 230 / 6e-79 RNA polymerase Rpb8 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G120500
[exp]
245 / 2e-84 AT3G59600 228 / 5e-78 RNA polymerase Rpb8 (.1)
Potri.013G120400
[exp]
156 / 1e-49 AT3G59600 135 / 1e-41 RNA polymerase Rpb8 (.1)
Potri.013G072000
[exp]
146 / 1e-45 AT3G59600 138 / 1e-42 RNA polymerase Rpb8 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF03870 RNA_pol_Rpb8 RNA polymerase Rpb8
Representative CDS sequence
>Lus10013760 pacid=23169049 polypeptide=Lus10013760 locus=Lus10013760.g ID=Lus10013760.BGIv1.0 annot-version=v1.0
ATGACTAATATGCATCACCGAGTAGAATTAGCTCCGGATCAAACCGGGTTTTCGTCAGCGAGGATGTCGAATATAATCCTCTTCGAGGACATTTTCTTCG
TCGACCAGCTCAACCCCGATGGCAAGAAGTTCGACAAAGTTACTCGAATTCAAGCGCATAGCCAGAATTGTGACATGTTTATGCATCTCGATATCAACAC
AGAGATATATCCTATGTTTGTGAATGACAAGTTTACTATGGCACTGGCTTCTACATTAGACTATGATGGGACACCTGACACTGGCTACTACAATGCAGCA
TCAAGAAGTACCCTGGCAGACAAATATGAATATGTCATGCACGGGAAGCTATACAAGCTATCCGAGGAAGGCTCAGGGAGATCAATTAAAGCGGAAATGT
ATGCTTCCTTTGGAGGGCTTTTAATGTTGTTGAAAGGGGATCCTTCTCATGTAGCTAACTTTGAGCTTGATCAGAGAGTCTTCCTTCTCATCAGGAAGAT
CAGCAAGTGA
AA sequence
>Lus10013760 pacid=23169049 polypeptide=Lus10013760 locus=Lus10013760.g ID=Lus10013760.BGIv1.0 annot-version=v1.0
MTNMHHRVELAPDQTGFSSARMSNIILFEDIFFVDQLNPDGKKFDKVTRIQAHSQNCDMFMHLDINTEIYPMFVNDKFTMALASTLDYDGTPDTGYYNAA
SRSTLADKYEYVMHGKLYKLSEEGSGRSIKAEMYASFGGLLMLLKGDPSHVANFELDQRVFLLIRKISK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G54250 NRPE8A, NRPB8A,... RNA polymerase Rpb8 (.1) Lus10013760
[exp]
0 1
AT5G62390 ATBAG7 BCL-2-associated athanogene 7 ... Lus10031724
[exp]
2.0 0.8282
AT2G42910 Phosphoribosyltransferase fami... Lus10031395
[exp]
2.6 0.8108
Lus10000657
[exp]
4.9 0.8090
AT1G11240 unknown protein Lus10011247
[exp]
7.4 0.8478
AT5G64160 unknown protein Lus10015845
[exp]
11.1 0.8394
AT3G07590 Small nuclear ribonucleoprotei... Lus10003727
[exp]
11.8 0.8472
Lus10014667
[exp]
13.0 0.7779
AT1G24430 HXXXD-type acyl-transferase fa... Lus10037956
[exp]
13.4 0.8052
AT5G41010 NRPE12, NRPD12,... DNA directed RNA polymerase, 7... Lus10030353
[exp]
15.0 0.7828
AT3G05070 unknown protein Lus10026367
[exp]
15.8 0.8214

Lus10013760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.