Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08810 774 / 0 SUB1 calcium ion binding (.1) AT2G04280 495 / 1e-170 unknown protein AT4G12700 472 / 8e-162 unknown protein AT2G41150 80 / 7e-16 unknown protein AT3G56750 73 / 1e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039176 [exp] 1027 / 0 AT4G08810 845 / 0.0 calcium ion binding (.1) Lus10039175 [exp] 573 / 0 AT4G08810 463 / 5e-163 calcium ion binding (.1) Lus10041091 [exp] 461 / 2e-158 AT2G04280 745 / 0.0 unknown protein Lus10036415 [exp] 467 / 4e-154 AT2G04280 828 / 0.0 unknown protein Lus10018111 [exp] 77 / 1e-14 AT2G41150 555 / 0.0 unknown protein Lus10008860 [exp] 76 / 2e-14 AT2G41150 545 / 0.0 unknown protein Lus10022403 [exp] 75 / 4e-14 AT2G41150 560 / 0.0 unknown protein Lus10023250 [exp] 71 / 7e-13 AT2G41150 547 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005500 [exp] 870 / 0 AT4G08810 762 / 0.0 calcium ion binding (.1) Potri.003G219200 [exp] 512 / 3e-179 AT4G08810 451 / 1e-155 calcium ion binding (.1) Potri.014G170200 [exp] 503 / 9e-174 AT2G04280 862 / 0.0 unknown protein Potri.006G040400 [exp] 82 / 2e-16 AT3G56750 567 / 0.0 unknown protein Potri.016G035600 [exp] 81 / 4e-16 AT3G56750 549 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013761 pacid=23169057 polypeptide=Lus10013761 locus=Lus10013761.g ID=Lus10013761.BGIv1.0 annot-version=v1.0 ATGAAGGAAGCAACTCCTGGGACTGAGCCGATTGGCCAAAACCTAATCAAATCGATTAGTAATCTCTGCTTCTCGGTGTTTGTCTTCACTGTTTTTATAT TCACCGTCATTGCAATCACTTACCAACCACCAGATCCATGGCTGGAATCAGCTCCAGCTCTTACCAAATTCTTCACCCAGAGTGAAAATGCCACTTTCCA AATTGACAATTCCATCCTCAAGACTGGCGAGGATATACCGACCGGTTCCGCTCCCACAGTTCCCTCCACTGTAGACTTGAAGCCCATAACCGAGGAGGTG ATCGAGAAGTCCGAGTCGAAGATCGAGAATTCTAATTCTACTCTCGAATCCTCGGGCTGTGAGGATCTACAGGTTGTCAATTGCTCGGATCCGAGGGTTT TGATCACCGTTGAGAGGTTCAATCTGAAGCGTTTCAAGAGCATTGTGTTCTTGGAGTATCAGACTCCGGTCAACGGCTCGAAACCGGACGAGTGTGACGT GTCCTGGAAGTTCAGAAACAAGAAGGAGAAGTCATGGAGGAAGTATAGAGACTTCAGGAGGTTTAAGTTTGGATTCGGAGAGAATTGTACGTATAAGATT GTTCATTCCAACGGCTGGCATTCTGGTCTCAATGCTCGCCTGCCAAGGGCTAGAGCCGGCGTTCCTAGGCCGAGAGTTGCTCCGCCGGTTCGTGATGATG AGATCAACGACACCATACCGACTCTCGGATCGGATTCGAATTTCCGGAAAGGGAAGTACTTATACTATGCAAGAGGAGGAGATTATTGCAAAGGGATGAA TCAATACACGTGGAGCTTCTTATGTGGATTAGGTGAAGCAATGTATTTGAACAGGACATTTGTGATGGATTTGAGTTTGTGCCTATCAGGTAACTATAAT CCCACCGGGAAAGATCAAGAGGGGAAGGACTTTCGGTACTATTTCGATTTCGAGCATCTTAAGGAGGTGGCATCCATTGTAGAAGAGAGTGAGTTCTTGA GAGACTGGAAAAAATGGGACCGTTCACACAGAAAGAAGATCCCGGTCAGAAAGATCGTAACACACAAGACTACCCCGATGCAGCTGAAGAAGGATAAGAG CACCGTGATCTGGAGGCAGTTTGATGCTCCCGAGCCGGAGAACTACTGGTACAGAGTCTGCGAGGGAGAAGCCGCTAAGCAAATTCGCAGACCATGGCAT GCAGTTTGGAAGTCGAAGAGACTGATGAATATTGTTTCGGAGATCAGCGGCCTGATGGACTGGGATTTCGACGCAGCTCACGTGGTTCGAGGGGAGAAAG CGGCTAACAAGGATCGGTGGCCGAGGTTGGATTGGGACACGTCTCCCGATGCGCTTGTTACGAAGCTTCAGACAATGATCCAGCCGTGGAGGAACTTGTA CATTGCGACTAACGAACCATTTTATAACTACTTTGATAAGCTGAGGTCGCATTATAAAGTGCATTTGCTTGATGATTATAAGGAGCTGTGGGGGAATGGG AGCGAATGGTACAACGAGACGATGGCTTTGAACGGAGGAAGGCCGGTTGAGTTCGATGGATATATGAGAGTCGCTGTTGATACCGAGGTGTTCTACAGGG CGAAAACTCGGGTAGAGACGTTCTATAATTTGACTGCTGATTGCAAGGACGGAATCAATACATGTTGA
AA sequence Show only first row Show all	>Lus10013761 pacid=23169057 polypeptide=Lus10013761 locus=Lus10013761.g ID=Lus10013761.BGIv1.0 annot-version=v1.0 MKEATPGTEPIGQNLIKSISNLCFSVFVFTVFIFTVIAITYQPPDPWLESAPALTKFFTQSENATFQIDNSILKTGEDIPTGSAPTVPSTVDLKPITEEV IEKSESKIENSNSTLESSGCEDLQVVNCSDPRVLITVERFNLKRFKSIVFLEYQTPVNGSKPDECDVSWKFRNKKEKSWRKYRDFRRFKFGFGENCTYKI VHSNGWHSGLNARLPRARAGVPRPRVAPPVRDDEINDTIPTLGSDSNFRKGKYLYYARGGDYCKGMNQYTWSFLCGLGEAMYLNRTFVMDLSLCLSGNYN PTGKDQEGKDFRYYFDFEHLKEVASIVEESEFLRDWKKWDRSHRKKIPVRKIVTHKTTPMQLKKDKSTVIWRQFDAPEPENYWYRVCEGEAAKQIRRPWH AVWKSKRLMNIVSEISGLMDWDFDAAHVVRGEKAANKDRWPRLDWDTSPDALVTKLQTMIQPWRNLYIATNEPFYNYFDKLRSHYKVHLLDDYKELWGNG SEWYNETMALNGGRPVEFDGYMRVAVDTEVFYRAKTRVETFYNLTADCKDGINTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08810		SUB1	calcium ion binding (.1)		Lus10013761 [exp]	0	1
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10037096 [exp]	1.7	0.9767
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10036886 [exp]	2.4	0.9637
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Lus10036887 [exp]	4.0	0.9573
AT2G41770			Protein of unknown function (D...		Lus10035458 [exp]	4.2	0.9503
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10038350 [exp]	5.2	0.9445
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	5.9	0.9557
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10024987 [exp]	6.2	0.9579
AT2G20760			Clathrin light chain protein (...		Lus10011194 [exp]	7.1	0.9384
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10002299 [exp]	8.8	0.9500
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	8.8	0.9403

Compare expression of checked genes

Lus10013761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.