Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19820 1244 / 0 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT4G27640 176 / 4e-45 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039172 [exp] 1310 / 0 AT5G19820 1229 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10034202 [exp] 186 / 2e-48 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1) Lus10029067 [exp] 185 / 3e-48 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1) Lus10008864 [exp] 45 / 0.0003 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 45 / 0.0004 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 44 / 0.0006 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G004800 [exp] 1324 / 0 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 1306 / 0 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 1206 / 0 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.017G137400 [exp] 582 / 0 AT5G19820 682 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G082601 [exp] 563 / 0 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084901 [exp] 543 / 0 AT5G19820 509 / 1e-167 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084501 [exp] 178 / 5e-51 AT5G19820 184 / 1e-53 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 183 / 1e-47 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.010G169800 [exp] 183 / 1e-47 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1) Potri.004G122133 [exp] 145 / 3e-39 AT5G19820 140 / 4e-38 embryo defective 2734, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10013763 pacid=23169136 polypeptide=Lus10013763 locus=Lus10013763.g ID=Lus10013763.BGIv1.0 annot-version=v1.0 ATGGACGAGTCAACTCAGCAGCTCCAGCAAGCTCAGCTGGCCGCCATCCTCGGAGCGGACCCGGCGCCTTTCGAAACCCTAATCTCCTCCCTCATGGCCT CCTCCAACGAGCAGCGCTCCCAGGCCGAGCTCGCTTTCAACCTCTGCAAGCAGACCGATCCCGATTCCTTATCTCTCAAGCTGGCTCACCTCCTCCAGCT GTCTCCTCACCCCGACGCTCGCGCCATGTCCGCCGTCCTCCTCCGCAAGCTCCTCACCCGCGACGACGCTTATCTGTGGTCGCGGCTCACCACAAAACTG TTGCCTGGATACTTGTCTGCTCCAGAGTGGCAGAAACATCACGCCGCCCTCATTGCCCTTGCTCAAATTGCGGAGGGCTGCGCTAAGGTGATGTTGAAAA CCCTTGAACAAGTAGTCACAATGGTCCTCAACTCGTTCCAAGATCCTCATCCCAGAGTAAGGTGGGCAGCGATAAATGCGATAGGGCAGTTGTCTACAGA CTTGGGTCCAGATTTGCAAAATCATTATCATAGTAGAGTGCTGCCGGCACTAGCTGCTTCAATGGATGACTTCCAGAATCCAAGAGTGCAGGCACATGCT GCATCGGCTGTTCTTAACTTCAGTGAGAACTGTACTCCTGAACTCCTGACGCCTTATTTGGATGGCATCGTAAGCAAATTGCTGGTGCTCTTACAGAATG GAAAGCAAATGGTTCAAGAGGGAGCATTGACTGCTTTGGCATCAGTAGCTGACTCATCTCAGGAGCATTTCCAAAAGTACTATGATGCAGTGATGCCTTA CTTGAAAGCAATCTTGGTTAATGCAACCGACAAATCTAACCGTATGCTTCGTGCCAAGTCTATGGAATGCATTAGTCTGGTCGGGATGGCTGTTGGAAAG GATAAGTTCAGGGATGATGCTAAGCAGGTCATGGAAGTTCTCATGTCCTTACAAGGCTCCCAAATGGAGGCCGATGACCCAACTACAAGCTACATGCTAC AGGCATGGGCAAGACTGTGCAAATGCTTGGGGCAAGATTTCCTTCCATACATGAATGTTGTTATGCCTCCTCTGCTCCAGTCTGCCCAATTGAAGCCAGA TGTGACCATTACATCTGCAGATTCTGATAATGAGATTGATGATTCGGATGATGACAGTATGGAGACCATTACTCTTGGAGACAAAAGGATTGGCATCAAG ACTAGTGTTCTTGAAGAAAAAGCTACTGCTTGCAATATGCTGTGCTGTTATGCTGATGAGTTGAAAGAAGGTTTCTATCCATGGATTGATCAGGTGGCCC CAACTCTAGTGCCCCTTCTTAAATTTTACTTCCACGAAGAAGTGAGAAAAGCTGCAGTATCCGCAATGCCAGAGCTTCTTCGGTCAGCTAAGTTGGCTGT AGAGAAGGGATTAGCACAAGGTCGTGATGGCTCATATGTTAAGCAGTTATCTGACTACATTATTCCAGCTCTGGTTGAAGCATTGCATAAGGAACCTGAC ACTGAAATCTGTGCTAATATGTTGGATGCACTAAATGAATGTGTACAGATATCTGGCACACTTGTTGATGAAAGCCAGGTAAAATCAATTGTGGATGAGA TAAAGCAAGTAATCACTGCTAGCTCAAGCAGAAAAAAAGAACGGGCAGAGAGAGCCCAAGCAGAAGACTTCGATGCTGAGGAGGGTGAGCTGATCAAAGA GGAAAATGAGCAAGAGGAGGAAGTATTTGACCAAGTTGGTGAAATAATGGGAACTTTGATCAAGACATTCAAAGCTTCTTTCTTGCCTTACTTTGATGAG TTATCATCATACCTCACTCCTATGTGGGGCAAGGATAAGACAGCTGAGGAGAGAAGGATTGCGATTTGTATTTTTGATGATGTTGCCGAGCAATGTCGTG AAGCAGCCTTAAAGTATTATGATACTTTCCTACCATTTTTACTGGAAGCTTGCAATGATGAGAATCCAGATGTCCGACAGGCAGCTGTTTATGGACTGGG TGTATGTGCCGAGTTTGGCGGTTCTACTTTCAAGACTCTTGTTGGAGAATCACTTTCAAGACTTAATATTGTGGTAGGGCACCCTAATGCCAAGAACTCT GAAAATGTCATGGCATATGATAATGCCGTTTCTGCTTTGGGGAAGATTTGCCAGTTCCATCGCGACAGCATCGATGCTTCACAGGTTATCCCTGCATGGT TAAATTGTCTGCCAATTACCGGTGATTTGATTGAAGCAAAAGTTGTCCATGAACAACTTTGTTCCATGGTTGAGAGGTCAGATGTTGTAGTTTTGGGGCC GAACAACCAGTATCTCCCAAAGATTGTATCAGTCTTTGCTGAGGTCCTATGTGGGAAGGAACTTGCAACAGAACAGACCTTAAGTAGAATGGTGAATCTG CTAAGGTACCTGAAGCAGACATTGCCTCCAGATACCTTAGCTTCGACATGGTCTTTGTTACAACCGCAGCAACAGATGGCACTTCAATCGATCCTCTCAT CTTGA
AA sequence Show only first row Show all	>Lus10013763 pacid=23169136 polypeptide=Lus10013763 locus=Lus10013763.g ID=Lus10013763.BGIv1.0 annot-version=v1.0 MDESTQQLQQAQLAAILGADPAPFETLISSLMASSNEQRSQAELAFNLCKQTDPDSLSLKLAHLLQLSPHPDARAMSAVLLRKLLTRDDAYLWSRLTTKL LPGYLSAPEWQKHHAALIALAQIAEGCAKVMLKTLEQVVTMVLNSFQDPHPRVRWAAINAIGQLSTDLGPDLQNHYHSRVLPALAASMDDFQNPRVQAHA ASAVLNFSENCTPELLTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPYLKAILVNATDKSNRMLRAKSMECISLVGMAVGK DKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVTITSADSDNEIDDSDDDSMETITLGDKRIGIK TSVLEEKATACNMLCCYADELKEGFYPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGLAQGRDGSYVKQLSDYIIPALVEALHKEPD TEICANMLDALNECVQISGTLVDESQVKSIVDEIKQVITASSSRKKERAERAQAEDFDAEEGELIKEENEQEEEVFDQVGEIMGTLIKTFKASFLPYFDE LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYDTFLPFLLEACNDENPDVRQAAVYGLGVCAEFGGSTFKTLVGESLSRLNIVVGHPNAKNS ENVMAYDNAVSALGKICQFHRDSIDASQVIPAWLNCLPITGDLIEAKVVHEQLCSMVERSDVVVLGPNNQYLPKIVSVFAEVLCGKELATEQTLSRMVNL LRYLKQTLPPDTLASTWSLLQPQQQMALQSILSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	0	1
AT3G55410			2-oxoglutarate dehydrogenase, ...		Lus10005961 [exp]	1.0	0.9301
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	3.7	0.9101
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	6.2	0.9183
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	6.3	0.9280
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	6.7	0.9130
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10030293 [exp]	6.9	0.9127
AT5G28850			Calcium-binding EF-hand family...		Lus10008193 [exp]	7.7	0.8539
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10003545 [exp]	8.0	0.8895
AT1G73430			sec34-like family protein (.1....		Lus10001792 [exp]	9.3	0.8404
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026727 [exp]	9.6	0.8620

Compare expression of checked genes

Lus10013763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.