Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65780 65 / 6e-10 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 53 / 3e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035776 [exp] 1026 / 0 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10039165 [exp] 348 / 2e-110 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G143450 [exp] 1125 / 0 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 1100 / 0 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 1098 / 0 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077800 [exp] 78 / 6e-14 AT1G65780 719 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140200 [exp] 77 / 2e-13 AT1G65780 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077700 [exp] 72 / 3e-12 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140300 [exp] 72 / 3e-12 AT1G65780 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140501 [exp] 71 / 6e-12 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077600 [exp] 70 / 2e-11 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140601 [exp] 69 / 3e-11 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00580 [flax] [poplar] UvrD-helicase UvrD/REP helicase N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013768 pacid=23169113 polypeptide=Lus10013768 locus=Lus10013768.g ID=Lus10013768.BGIv1.0 annot-version=v1.0 ATGGCGATGAAGCAGGTAGCTACCGCGAAAAAGGGTGTTATCCATGAAGAACTAGCCAGAGTTTTGGTACAAGTTGAAAACGAACTTGAAAAGTTTCATG ATTTACCTGATGTCGACAGCATTCTGTTTGAGAAAGCTAAATGGAAGGTTTATCTGAAGGATTCGTTTAAAAGTGTTCATTATCGAATGCTTTATGTTTT GTATCTTCTCATCTTTATGCTGTTTTTCCTGAACAACAACTTCAGAACGTCATTTCAGAAGCTTGACTCATCTGCCTTGAAAAAGCTGGTTATGAACTTG TTGCTGAGGCTTTCTTATGGATTGAGGCCGAGGAGAAGGAAAACAGACGTAGAATGTGAGAACTCAAAGCAGATTGTCAAGCATTTCAGGGTTAGGCATC TGTTAGTTATATGCTCGGTGGATATTTTAAAGGACTCAGGCTTCCACTGGCAAGTCTTGAAGATTTGGGATATAGTGTCTGCTATGAACACGCCATTTCT GATTAAACGTCTTGATTCCATCTTTGCATTGCATTCTGATGGTTACATCAATCGATGCAAGGTGAAGTCCTTTGAAGGCATACTAGAGGTTCCAATGACT TGGAAACATGACATACCTCGCTACAAGAGCACTTGCAGTGCTGAAACTGGAAATGCATCTCCTGAAAGATGCATGACAAGCGATGGTTTGATGCTTATGA AATTCTATTCTTTATCTTCTGGCATCAACAGGAACCTGCTATCTGGTTGTGATGGCCAGGAGGTTGATTTTCCATTAGAGCTGTCTGATCAAGAGAAGGA AATTGTTCAATTTGATAAGAGCTCTTTCGTACTTGGTAGATCATGCAGTGGGAAAACCACTGTGTTGGTTATGAAGTTATTTCAAAGGGAGCAGCTTCAT CACATAGCTTATCAAGGATTTCATGAGCAAGGTGACGATGTAGAAACTGAAGGCGGTAGTGTCTTGAAACAAATGTTTGTGACGGTAAATCCCAGATTAT GCCATGTTGTTAAGCAGCACATTTCTCGTTTGAAAAGATCCACCTGCGGATGGAACTTCGTATCTGAAACCGCTGAACTTGAATTGGATGAAATTGATGA GACATCCCTTTCTCTGGACTTCCCAAATTCATTTGTTGAAATCCCATTAATATGCTTCCCTCTTGTTATAACTTTCAAGAAGTTTTTGCTTATGCTGGAT GCCACGGTCGGGGTCTCTTTCTTTGAGAGGTTCCCTGAGGCCTTTCATCAAGAAAAAGTTAAGAGTTCCAAGTCCTTGACCTTGCAAACTTTTATCAGAA CCAGGGAGGTTGGTTATGAGAAATTTAGTTCATTGTACTGGCGCCACATGAACCAGAAAATATTAACCAAGAGTGTTGATCCGTTTCTGGTTTTCACCGA GATAACTTCTCATATCAAGGGCGGATTCCAAACTTTAGAGGCCAGTGGTGGTCATCTAAGCCGTGAGGATTATGTGTCCCAATCTGAACGTCGTCTATCT AATTTGACAGAGCTGGAAAGGGGCAGAATTTATGACATCTACCTTGAGTATGAAAAGAAAAAGGCTAAAAACGGAGAGTTTGATTTAGCAGATTTTGTGA CCGACATACTTCTTCGGTTAAGAGTTGAAGGATTAATCAAAGCACCAATGGACTTTGTTTACGTTGATGAAGTTCAAGATCTTACAATGAAGCAGATTGC TCTTTTCAAGCATGTCTGTTCAAATGTTGAAGAAGGTTTTCTTTTCACTGGCGACACAGCACAAGCGATTTCCAAAGGCGTTGAGTTCAGGTTCAAGGAT ATAAGGTCCCTATTCTATGAAACGTTTATACTTAATTCAGGACGTTTAGGACCTTCCCGTGGCACTGCAAAGCAACAACTTTCTGAGGTTTTTCAGCTGA GTCAGAACTTCCGAACACATGCTGGGGTTCTTAAGCTAGCTCAAACTGTTATTGACTTGATTTATTATTTCTTCCCTCGCTCGATTGATGAACTGAATCC GGAGACGAGTCATCTTTATGGGGAGATGCCCGTGCTGCTTCATTCTTTGAAGCATAAGAGCATGTTCAACTGCATGTCTGACATTTACTTTGGTGCTGAC AAGAAAAGTTGGGAGTTTGGGGCTGAGCAGGTAATATTAGTAAGAGATCAAGAAGTAAAAAACAATGTCGTATGCCAAGTGGGCAAGCAAGCTCTTGTTC TCACGATATTGGAGTGCAAAGGCTTAGAGTTTGAGGATGTCTTGCTGTATGATTTTTTTGGTTCCTCTCCTGTGCCAGATCAGTGGGAGGTACTAAATAT ATACATGAAGGCACATAAATTGTCTCCTAGTGATGAATGTCTGATGCCAAACTTAAATGAGGGAAAGCTGGTTTCTTTGTGTCACGAGCTCAAGTTACTG TACGTAGCTATAACTCGTACTAGGCAAAGGTTCTGGATTTTGGATGAAATCTGGAATCCTATGCTGGAATTGTGGAAGCAGAAGGGTATTGTCAAGCTTC AACAGTTCGATAGTGAAGTCTTACAAATTATGCAAGCCCCTTCTACTCGGGAAGCATGGAAGTCACGGGGGAAGAAGTTCTTCCATTTGCAGAACTATGA AACTGCTAGAATGTGCTTCAAGAAAGCAGGGGAATCATACTGGGAAAAGTATTGCGAGGCGTCCGAATTGAGATCAAATGCTGATCAAATGAGGAGCTCT GATCCTGTAGTATCTCGTCGTCATCTGTCAGATGCTGCTCTAATCTATGCCAAAATTGGGAAGGATGCACTTGCAGCAGAATGCTACTTCGAGTTGCAGG ATTATGTCAAAGCAGCTGAAATTTATTTGGAGAAGTTTGGAGCCTCAAAACTACAAGAGGCTGGTGAATGTTTCTGTCTTGCCAAGTGCTACAGAAGAGC TGCTGAAGTCTATTATAAGTGCAACGCTTATGTGAAGTGTTTGTCTGCCTGTATCGACGGCAAATGTTACGAAACCGGATATGACTACATTCAACAATGG AGGAAGGATGGCGTTTTTAATTTTACGGAATTCGTGGAATTCCTTAAAAAAGGAGCACTTCATTTTCATAGGCTGGAAAATGACGAATTCATGATCATGT TTGTGCGAGCTCTTAATTCCAAGGACCAAATACGTAGCTTCTTAAGAAGTAGACACTTGCTTGATTATCTTCTCCGCTTGGAGGAAGAGTGGGCAAATTA TTTAGAAGCAGCGGCTATTGCAATGGATATCGGTCTGGAAACTGTTGCTGCTAATAATCACGAGAGGGGAGGACAATATCAAGAGGCTTGCCATGTTATC CTGCGTCACGTGCTTGGTGAGTCCCTTTGGGGAGACGCAAATAAAGGCTGGCCGGTCAGAGAATTCGAGGGGAAGACGAAGCTACTGAACCAAGCTAAAA CCTGTGCAGAGCATGTTTCAGCAGCTTACCATGGATTTGTTTGCCAGGAGACATTTATGTTATCTTATGCAAATGGTAATAGTTTGTGGAAGCTGAAAAA TAGTTTTGAGTATTTTCAGCGGCAGGGCAATATTAGGAATGAAATATTGTCCGCTCGAAGTGTCATCGATATTTTCATTGATTCAAGTGCCTCGGGCAAC TTCAGGGATGATGTTTTAGTTGCCGATATATTGAACTATACAGAAGATTGGAGGATGCCCTGGAAAAAGCTTTCCTTCTTAAATCTGTATGACTATTGGA AGTCATGGAAGGGGCATATTGACAAAATAGTTGCATATTGTGTTGAGAAAGGACACTGGGGTTGTCATGGCGAGTTTTGCATGGACTACTTGGGTGTAAG GGAGCAGCAGAGCGATAAAGAAACTGAATACAATGTACTTTATCCTGATGCAGCATGGATCAATTCTATGATTAGCTCGAAAGTTGTTCAGAACAAAAGG AAGCGAGTCAAGGTTAACGCTGACCAGTTCTGGAAAGCTGCTAAAGACTATTGGTTCACAGAAAGACGTGTGGTTGGGGAGAAGGTGCTCCATAAACTTG AAAACGTTTATGAATATTGCGTTCGGAATGGTTTATCAGTATTCTGCAGAAGCATGCTACTGGTAAAGATTTTTGAGCTGTCCCGTTCTCTTTTCTCATT CAAATTGGGGAATCCCGTTTATCAGTATACTGCAGAAGCATGCTACTGGACAGATCTAGTACGAAGGTTTATCGAGCACTATACAGAGAACATCCTGAGC ATTCATTTCCTCGAGCCGAACGAGTCATTCAGAAAGCATATGATCATCGCAAGGACATTGGAAGGTTTCAAGGTCCCTTTTGAGGAAGCAGTTTGTTATT ACATAGAGAATTTACCACACGGGGTAACATATCGTCAAATTGCAGAGGTTACGGCAGTTGCTCTCTCGGGAAAACTTCATCACGAAACGCTACAGATGCT GGTCCAAACCTTGAAGAAGAAGGCGGTTTGCAGCTCGTGCATTGAGGAAACCATGGGACCTTCGAAAGAAGCTACAGTGAGGAAGCTCCACGAAGTTGTA GAACACATGTACTATGCCGAGTTTGAGAAAGCAGATGAGACTATGTCACCAAATTGTCTAGTGTATCTGCTAGACCGGTTGGTAATATTATTGTTGGCTG TGAAGGGAGGTTTCTACTGTCCGAGATCATCCGTGGTTGAGTGGTTGATGCACAATGGATGGCATTACACCTGCTCAACTTCTACTTCTGATCGTTATGA GCAACCTTTTGTGGAAGAAGCTCTAGATTCGGTATCCTTCATAGTCAAAGACATCTTCTGCAACGAGCGTGACTGCAAAACACCGAGATGGACAAAGTCA TTCAATGAGAAATTGGAGTCTTATCCATTTGTGGTGCTGAGGTTAGTAGCCATAGTTTGCATTCTTAACATCAACACTGGAAAGTGCTCTGATCTGCTCT CCAACATCTTGAGTAGAAGAGAAATCACGTCTCTGTCACCGCTGGAGTTCTACAGTTGTCTGACCCGTACGAGGTGTCAGGATGAAACGAACCATGCAGT TGTGTCTTTTTCAAAAGCACTGGCTGAGATTAATAACCCTCTGGTTTATGTGGACTTGAAGGGAAGCGGTTCCACCAGATTTAAACCTCCAGGAGCCCCC ATCATCTTTTTGGACACCAAGGTTAGTGGAAGACAAGACATACTGAATCGGGTGTGCCCGAGAAACATGTCGGCATCTGCAAATAGTGTCTGA
AA sequence Show only first row Show all	>Lus10013768 pacid=23169113 polypeptide=Lus10013768 locus=Lus10013768.g ID=Lus10013768.BGIv1.0 annot-version=v1.0 MAMKQVATAKKGVIHEELARVLVQVENELEKFHDLPDVDSILFEKAKWKVYLKDSFKSVHYRMLYVLYLLIFMLFFLNNNFRTSFQKLDSSALKKLVMNL LLRLSYGLRPRRRKTDVECENSKQIVKHFRVRHLLVICSVDILKDSGFHWQVLKIWDIVSAMNTPFLIKRLDSIFALHSDGYINRCKVKSFEGILEVPMT WKHDIPRYKSTCSAETGNASPERCMTSDGLMLMKFYSLSSGINRNLLSGCDGQEVDFPLELSDQEKEIVQFDKSSFVLGRSCSGKTTVLVMKLFQREQLH HIAYQGFHEQGDDVETEGGSVLKQMFVTVNPRLCHVVKQHISRLKRSTCGWNFVSETAELELDEIDETSLSLDFPNSFVEIPLICFPLVITFKKFLLMLD ATVGVSFFERFPEAFHQEKVKSSKSLTLQTFIRTREVGYEKFSSLYWRHMNQKILTKSVDPFLVFTEITSHIKGGFQTLEASGGHLSREDYVSQSERRLS NLTELERGRIYDIYLEYEKKKAKNGEFDLADFVTDILLRLRVEGLIKAPMDFVYVDEVQDLTMKQIALFKHVCSNVEEGFLFTGDTAQAISKGVEFRFKD IRSLFYETFILNSGRLGPSRGTAKQQLSEVFQLSQNFRTHAGVLKLAQTVIDLIYYFFPRSIDELNPETSHLYGEMPVLLHSLKHKSMFNCMSDIYFGAD KKSWEFGAEQVILVRDQEVKNNVVCQVGKQALVLTILECKGLEFEDVLLYDFFGSSPVPDQWEVLNIYMKAHKLSPSDECLMPNLNEGKLVSLCHELKLL YVAITRTRQRFWILDEIWNPMLELWKQKGIVKLQQFDSEVLQIMQAPSTREAWKSRGKKFFHLQNYETARMCFKKAGESYWEKYCEASELRSNADQMRSS DPVVSRRHLSDAALIYAKIGKDALAAECYFELQDYVKAAEIYLEKFGASKLQEAGECFCLAKCYRRAAEVYYKCNAYVKCLSACIDGKCYETGYDYIQQW RKDGVFNFTEFVEFLKKGALHFHRLENDEFMIMFVRALNSKDQIRSFLRSRHLLDYLLRLEEEWANYLEAAAIAMDIGLETVAANNHERGGQYQEACHVI LRHVLGESLWGDANKGWPVREFEGKTKLLNQAKTCAEHVSAAYHGFVCQETFMLSYANGNSLWKLKNSFEYFQRQGNIRNEILSARSVIDIFIDSSASGN FRDDVLVADILNYTEDWRMPWKKLSFLNLYDYWKSWKGHIDKIVAYCVEKGHWGCHGEFCMDYLGVREQQSDKETEYNVLYPDAAWINSMISSKVVQNKR KRVKVNADQFWKAAKDYWFTERRVVGEKVLHKLENVYEYCVRNGLSVFCRSMLLVKIFELSRSLFSFKLGNPVYQYTAEACYWTDLVRRFIEHYTENILS IHFLEPNESFRKHMIIARTLEGFKVPFEEAVCYYIENLPHGVTYRQIAEVTAVALSGKLHHETLQMLVQTLKKKAVCSSCIEETMGPSKEATVRKLHEVV EHMYYAEFEKADETMSPNCLVYLLDRLVILLLAVKGGFYCPRSSVVEWLMHNGWHYTCSTSTSDRYEQPFVEEALDSVSFIVKDIFCNERDCKTPRWTKS FNEKLESYPFVVLRLVAIVCILNINTGKCSDLLSNILSRREITSLSPLEFYSCLTRTRCQDETNHAVVSFSKALAEINNPLVYVDLKGSGSTRFKPPGAP IIFLDTKVSGRQDILNRVCPRNMSASANSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65780			P-loop containing nucleoside t...		Lus10013768 [exp]	0	1
					Lus10007204 [exp]	9.7	0.9033
AT1G58230			binding (.1)		Lus10042867 [exp]	17.5	0.8918
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033077 [exp]	24.7	0.8783
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	28.2	0.8792
					Lus10005601 [exp]	30.6	0.8709
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024283 [exp]	37.1	0.8742
AT5G58100			unknown protein		Lus10008551 [exp]	40.2	0.8517
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	41.4	0.8702
					Lus10037828 [exp]	41.4	0.8130
AT1G58230			binding (.1)		Lus10028167 [exp]	42.3	0.8701

Compare expression of checked genes

Lus10013768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.