Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13870 100 / 3e-25 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT3G12430 82 / 1e-18 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12460 79 / 2e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G36110 74 / 5e-16 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12410 69 / 4e-14 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12440 68 / 2e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12470 63 / 6e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G48350 61 / 2e-11 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G06450 54 / 7e-09 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12420 53 / 2e-08 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039164 [exp] 422 / 1e-152 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2) Lus10029478 [exp] 137 / 1e-40 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039591 [exp] 131 / 3e-38 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029479 [exp] 121 / 3e-34 AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10043049 [exp] 105 / 8e-28 AT2G36110 121 / 4e-34 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022556 [exp] 89 / 8e-21 AT4G13870 246 / 1e-80 Werner syndrome-like exonuclease (.1.2) Lus10036491 [exp] 65 / 3e-12 AT3G11770 64 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10010357 [exp] 64 / 7e-12 AT3G11770 66 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016641 [exp] 54 / 2e-09 AT4G13870 108 / 2e-30 Werner syndrome-like exonuclease (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028700 [exp] 255 / 2e-86 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.006G031400 [exp] 251 / 7e-85 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.011G116000 [exp] 139 / 4e-41 AT3G12410 91 / 2e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.017G059200 [exp] 85 / 2e-19 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.019G021900 [exp] 74 / 9e-16 AT3G11770 77 / 3e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.013G049000 [exp] 69 / 3e-14 AT5G06450 / Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028400 [exp] 56 / 2e-09 ND / Potri.002G185500 [exp] 56 / 3e-09 AT3G12410 45 / 1e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028501 [exp] 50 / 2e-07 ND / Potri.005G020000 [exp] 49 / 1e-06 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10013769 pacid=23169082 polypeptide=Lus10013769 locus=Lus10013769.g ID=Lus10013769.BGIv1.0 annot-version=v1.0 ATGGCGCCGATCAGCATCATAGACCACCGTCTCCCCGACGAAACTCACAATATCTACGACGTCACTTTCTTCACCGACGAAATCCACACTCTCCTCACCC AATCCCCGGGACCCCTCCACCAATGTCTCCTAGAAACCACTCGACAGCAGCAGAGCTCCGGCTCCGCAGTCGCCGTCGTAGTCGGCCTGGACGTGGAGTG GCGCCCGAACTTCAGCCGCAACCACAACAATCCGATCGCAACTCTCCAGCTCTGCGTGGGGGGCAGGTGCGTGATCTTCCAGCTCATCCACTCCCCGTCC ATCCCACAGTCCCTCTTCGATTTCCTCCAGAGCAAGGACTTCGTTTTCGTCGGAGTCGGAATCGAGAACGACGTCGAGAAGCTGATCGAGGATTACGGGC TGACTGTGGCGAACTCGGTCGATCTGAGGGGTCTCGCAGCGGAGAAGCTGGGAGACAAGGCGCTGAAGAACTCGGGGCTGAAGCAGCTGGCCAGAGAGGT GCTGGGGAAAGAGATCGAGAAGCCGAAAAGGGTTTCGATGAGTAGGTGGGACAATCTGTGGCTCACTCCACTCCAGGTCCAGTATGCTTGCGTTGATGCC TTTTTGTCTTATAAGATTGGGGACACTCTTAATGCTGGTTCTGCTGTCGCTCCTGCTGGTGGAGCGTATTAG
AA sequence Show only first row Show all	>Lus10013769 pacid=23169082 polypeptide=Lus10013769 locus=Lus10013769.g ID=Lus10013769.BGIv1.0 annot-version=v1.0 MAPISIIDHRLPDETHNIYDVTFFTDEIHTLLTQSPGPLHQCLLETTRQQQSSGSAVAVVVGLDVEWRPNFSRNHNNPIATLQLCVGGRCVIFQLIHSPS IPQSLFDFLQSKDFVFVGVGIENDVEKLIEDYGLTVANSVDLRGLAAEKLGDKALKNSGLKQLAREVLGKEIEKPKRVSMSRWDNLWLTPLQVQYACVDA FLSYKIGDTLNAGSAVAPAGGAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	0	1
AT5G10750			Protein of unknown function (D...		Lus10042428 [exp]	1.4	0.8897
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10018366 [exp]	3.5	0.8487
AT3G23490		CYN	cyanase (.1)		Lus10018091 [exp]	4.5	0.8223
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	4.7	0.8537
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	6.3	0.8097
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009041 [exp]	7.7	0.8007
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	9.5	0.8152
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	11.8	0.8019
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Lus10010486 [exp]	14.8	0.8019
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	16.0	0.7983

Compare expression of checked genes

Lus10013769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.