Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16340 340 / 1e-114 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 337 / 2e-113 AAE5 acyl activating enzyme 5 (.1) AT1G75960 320 / 6e-107 AMP-dependent synthetase and ligase family protein (.1) AT1G77240 311 / 2e-103 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 305 / 6e-101 AMP-dependent synthetase and ligase family protein (.1.2) AT1G21540 297 / 1e-97 AMP-dependent synthetase and ligase family protein (.1) AT1G65880 236 / 9e-74 BZO1 benzoyloxyglucosinolate 1 (.1) AT2G17650 233 / 1e-72 AMP-dependent synthetase and ligase family protein (.1) AT1G66120 226 / 5e-70 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 225 / 7e-70 AAE1 acyl activating enzyme 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039161 [exp] 503 / 2e-178 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10028375 [exp] 255 / 1e-80 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10007369 [exp] 252 / 1e-79 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 251 / 1e-79 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10031367 [exp] 239 / 2e-76 AT1G65890 548 / 0.0 acyl activating enzyme 12 (.1) Lus10012266 [exp] 240 / 4e-76 AT5G16370 733 / 0.0 acyl activating enzyme 5 (.1) Lus10010956 [exp] 238 / 2e-74 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10016011 [exp] 235 / 9e-74 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10016870 [exp] 230 / 1e-71 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067800 [exp] 391 / 1e-134 AT5G16370 799 / 0.0 acyl activating enzyme 5 (.1) Potri.019G068100 [exp] 381 / 3e-129 AT5G16340 778 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068001 [exp] 379 / 9e-129 AT5G16340 775 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G067900 [exp] 375 / 5e-127 AT5G16340 777 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.013G096200 [exp] 361 / 3e-122 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G148500 [exp] 352 / 3e-119 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1) Potri.004G000300 [exp] 349 / 5e-118 AT5G16340 756 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G082000 [exp] 245 / 3e-77 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.016G034800 [exp] 244 / 4e-77 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138451 [exp] 242 / 1e-76 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10013772 pacid=23169037 polypeptide=Lus10013772 locus=Lus10013772.g ID=Lus10013772.BGIv1.0 annot-version=v1.0 ATGCAAGATCTCAAGCCAAGAGCAGCCAATTCCCCTCCGCTAACTCCCTTCGACTTCCTCGATCGGACAGCCACCGTCTACGGCGACTCCCCCTCCGTCA TCTACAACCACACCACCTACACCTGGTCCCAAACCCGCCGCCGATGCCTCCAAGTCGCCTCCTCCCTCTCCTCCCACGGAATCCTCCCCGGACAAGTCGT CTCCGTCATCGCCCCCAACACCCCTGCCATGTACGAGCTCCAGTTCGCCGTCCCCATGTCCGGCGCCGTATTAAACAATCTCAACACCCGCCTCGACCCC CGCACTATCTCCGTCCTCCTCCTCCACTCCGAATCCAAGCTCGTTATCGTGGATTGCCTCTCCAGGACCCTCACCCTCCAGGCTCTATCTCTCTTCCCCG CCGGATCCACCCGACCCGGCCTTGTCCTGATTACAGACAACGACGAGCCTAAAGAAGCTTCATCGTTGACCGTCGATTTCGTCTGCACGTATGATGATCT TGTGACTGGAGGCGATCCTGAGTTTCAGTGGGTCCGGCCTAAGAGTGAGTGGGACCCAGCGATACTGAATTATACTTCTGGAACCACCTCCGCACCGAAA GGCGTGGTCCACTCGCACAGAGGTTTGTTCTTCGTCACGCTCTCTTCCTTAATCGACTGGGCCGTTCCCAAACAGCCCGTCTACCTTTGGGCCCTCCCGA TATTCCACGCGAACGGATGGAGCTTCCCGTGGGGGATAGCCGCCGTTGGTGGGTCTAACGTCTGGTTCCGGAGAGTCCGCGCGCTAACGTCTGTTTCCGG AAAGTCGACGCGCCTACCGTCTATGGGCTGA
AA sequence Show only first row Show all	>Lus10013772 pacid=23169037 polypeptide=Lus10013772 locus=Lus10013772.g ID=Lus10013772.BGIv1.0 annot-version=v1.0 MQDLKPRAANSPPLTPFDFLDRTATVYGDSPSVIYNHTTYTWSQTRRRCLQVASSLSSHGILPGQVVSVIAPNTPAMYELQFAVPMSGAVLNNLNTRLDP RTISVLLLHSESKLVIVDCLSRTLTLQALSLFPAGSTRPGLVLITDNDEPKEASSLTVDFVCTYDDLVTGGDPEFQWVRPKSEWDPAILNYTSGTTSAPK GVVHSHRGLFFVTLSSLIDWAVPKQPVYLWALPIFHANGWSFPWGIAAVGGSNVWFRRVRALTSVSGKSTRLPSMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16340			AMP-dependent synthetase and l...		Lus10013772 [exp]	0	1
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10013773 [exp]	1.0	0.9342
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	6.0	0.9296
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	6.9	0.9259
AT2G18890			Protein kinase superfamily pro...		Lus10006957 [exp]	9.5	0.8547
AT1G22900			Disease resistance-responsive ...		Lus10025804 [exp]	9.5	0.8806
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10001519 [exp]	11.0	0.9087
AT5G63620			GroES-like zinc-binding alcoho...		Lus10029549 [exp]	15.0	0.8669
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	18.0	0.9161
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	18.7	0.9080
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	18.8	0.9141

Compare expression of checked genes

Lus10013772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.