Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16370 422 / 1e-146 AAE5 acyl activating enzyme 5 (.1) AT5G16340 409 / 1e-141 AMP-dependent synthetase and ligase family protein (.1) AT1G21540 382 / 7e-131 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 379 / 7e-130 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 377 / 6e-129 AMP-dependent synthetase and ligase family protein (.1.2) AT1G77240 368 / 1e-125 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 305 / 1e-101 AAE1 acyl activating enzyme 1 (.1.2) AT1G65890 298 / 1e-97 AAE12 acyl activating enzyme 12 (.1) AT3G16910 296 / 3e-97 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT2G17650 290 / 2e-94 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039161 [exp] 551 / 0 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10007369 [exp] 307 / 8e-101 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10028375 [exp] 307 / 9e-101 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016011 [exp] 302 / 2e-99 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10037734 [exp] 297 / 1e-97 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 296 / 6e-97 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 293 / 5e-96 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016870 [exp] 292 / 1e-95 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10020787 [exp] 292 / 2e-95 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067800 [exp] 457 / 3e-160 AT5G16370 799 / 0.0 acyl activating enzyme 5 (.1) Potri.015G148500 [exp] 444 / 2e-155 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1) Potri.019G068001 [exp] 439 / 2e-152 AT5G16340 775 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G000300 [exp] 437 / 2e-152 AT5G16340 756 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068100 [exp] 439 / 7e-152 AT5G16340 778 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G067900 [exp] 438 / 9e-152 AT5G16340 777 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.013G096200 [exp] 434 / 9e-151 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G082000 [exp] 310 / 1e-102 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.005G250700 [exp] 308 / 7e-102 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.002G010600 [exp] 305 / 6e-101 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10013773 pacid=23169062 polypeptide=Lus10013773 locus=Lus10013773.g ID=Lus10013773.BGIv1.0 annot-version=v1.0 ATGTGCGGCGCTCCTGTGGTGCTCAACATGCTTACAAACGTCAACGGCCCCACCAAGCTTCCCAACCCGGTCCAGATCCTGACCGCCGGAGCTCCGCCTC CGGCAGCAGTCCTTCTCAAGACGGAATCGTTGGGGTTCGTGGTCAGTCACGGGTACGGACTGACGGAGACGGCGGGGCTTGTGGTGTCCTGCGCGTGGAA GAATCAATGGGATCGGTTCCCAGCGACGGAGCGGGCGAGGCTGAAATCGAGGCAAGGAGTGAAGATCGCGGGGTTTACGGAAGTAGACGTTGTAAATCCG GAGACTGGAGGGAGCGTGAAGAAGGACGGATCGTCGATCGGAGAAGTGGTTCTTCGAGGCGGGTGCGTGATGCTGGGTTATCTAAAAGATCCGACCGGTA CAGCCAAGTGTATGACCGATCAAGGGTGGTTCTACACGGGAGACGTCGGGGTGATCCATACGGACGGATATTTGGAGATAAGGGACAGATCTAAAGACGT GATAATAAGCGGAGGGGAGAACATAAGCAGCGTGGAAGTGGAGTCGGTGCTGTACGGTCATCCGGCGGTGAACGAGGCGGCGGTGGTGGCTAGGCCGGAT GAGTTCTGGGGGGAGACGCCGTGTGCTTTTGTGAGCTTGAAACAGGGAAGTGCGGAAACGACGACGGAGAAGGATGTGATTGAGCACTGCAGAGCGAAGA TGCCGCACTATATGGTGCCGAAGACGGTGGTGTTCAAAGACGAGCTGCCGAAGACTTCCACCGGGAAGATTCAGAAATACTTGCTGAGAGATGCTGCCAA GAAAATGGGTGCTTCGAAGCTCAGTCGCCTCTGA
AA sequence Show only first row Show all	>Lus10013773 pacid=23169062 polypeptide=Lus10013773 locus=Lus10013773.g ID=Lus10013773.BGIv1.0 annot-version=v1.0 MCGAPVVLNMLTNVNGPTKLPNPVQILTAGAPPPAAVLLKTESLGFVVSHGYGLTETAGLVVSCAWKNQWDRFPATERARLKSRQGVKIAGFTEVDVVNP ETGGSVKKDGSSIGEVVLRGGCVMLGYLKDPTGTAKCMTDQGWFYTGDVGVIHTDGYLEIRDRSKDVIISGGENISSVEVESVLYGHPAVNEAAVVARPD EFWGETPCAFVSLKQGSAETTTEKDVIEHCRAKMPHYMVPKTVVFKDELPKTSTGKIQKYLLRDAAKKMGASKLSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10013773 [exp]	0	1
AT5G16340			AMP-dependent synthetase and l...		Lus10013772 [exp]	1.0	0.9342
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10022761 [exp]	2.8	0.9102
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	6.3	0.9283
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	6.5	0.9112
					Lus10001993 [exp]	10.0	0.8587
AT1G64385			unknown protein		Lus10032376 [exp]	10.4	0.9100
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	11.4	0.9162
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	13.7	0.9143
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10024887 [exp]	18.4	0.8895
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	19.0	0.9042

Compare expression of checked genes

Lus10013773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.