Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23530 293 / 1e-97 ATCXE18 carboxyesterase 18 (.1) AT5G27320 221 / 2e-69 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 220 / 6e-69 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 212 / 7e-66 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 176 / 4e-52 ATCXE20 carboxyesterase 20 (.1) AT1G68620 170 / 8e-50 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 155 / 4e-44 ATCXE17 carboxyesterase 17 (.1) AT5G06570 154 / 8e-44 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45600 152 / 4e-43 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 152 / 5e-43 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039162 [exp] 317 / 9e-107 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10002254 [exp] 230 / 9e-73 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10000928 [exp] 229 / 1e-72 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 225 / 8e-71 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10029541 [exp] 193 / 1e-59 AT5G23530 256 / 2e-84 carboxyesterase 18 (.1) Lus10036168 [exp] 168 / 2e-49 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 160 / 4e-46 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 160 / 4e-46 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10008439 [exp] 159 / 1e-45 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014302 [exp] 366 / 2e-126 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.004G092500 [exp] 329 / 6e-112 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.001G459400 [exp] 311 / 6e-105 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.014G135900 [exp] 229 / 9e-73 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 228 / 2e-72 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 225 / 1e-70 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 216 / 2e-67 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G113700 [exp] 168 / 4e-49 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.008G118400 [exp] 168 / 6e-49 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G073000 [exp] 167 / 6e-49 AT2G45600 352 / 2e-121 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10013774 pacid=23169090 polypeptide=Lus10013774 locus=Lus10013774.g ID=Lus10013774.BGIv1.0 annot-version=v1.0 ATGTCACCGAGCAAGAACAATACCACTCCATCATCACCCAACCTCCCACTAAAAGTCCGGCTACTCTTCGCCCTCCACTCCTTCGGCGTCAACTTATCCC GTCAACCATGGCTAAGCCGCCGCCGTGACACCACCGTCACCGTCAACCGCACTATCTTGAACCTAGTCGACCTCAAGTCCCCACCTCCCAGCTCTAAAAA GCCTTACAAAGGCGTAACAGCCTTCGACGTCACGGTGGACCCCACTCGCAACCTCTGGTTCCGCCTCTACCGACCGGCGGAGGCGGCGGAAAATGGCCGC CCGTTTCTGCCGGTGGTAGTGTACTTCCATGGAGGAGGGTTTATGTCGATGGGTGCGGATTCCAAGTTCTACGACGTGTTTTGCCGTTCCGTTGCGCGCG AGACCCCTGCCGTTGTCGTGTCGGTGAATTACCGTCTTACCCCTGAACATCGATGGCCCCGTCAGTACGAAGACGGCCTTGATTTGCTCAAGTACATCGA CGGGCGAATCGTTGACTTCAAAAGGGATTACGGTGTTGACGTGGACTTTGGGCGTTGCTTTTTGGCTGGGGATAGTGCCGGAGGGAACCTTGCGCACCAC GTCGCAGTCAGAGCGGCGTCTTCAGATGATTTGAAGCACCTGAAGATCGCGGGGCTAATAGCGATCCAGCCGTTCTTCGGGGGAGAGGAAAGAACAGAGT CAGAGATCAAGGTGGTGGGAGTTCCGGTCATAACCATGGAATTGACAGACTGGGCTTGGAAGGCTTTTCTGCCGGAAGGATCCGACAGGGACCACCCGGC AGCCAACGTTTCCGGGCCGAACGGGGTGGATATCAAAGGATTAGTGAGGTTCCCTACGGCGACATTGGTCGTCGTGGGAGGGTTCGATCCGCTTCAAGAT TGGCAGAGAAGGTACTACGAATGGCTGAAGAAATCGGGAAAGACAGTGGAGTTGTTGGAGATCCCAAGTGCTATCCATGCCTTTTACACCATGCCGGAAT TGCCTGAGAATCTGTTGCTTCTCAAGCATATCAAGGATTTCGTCCAAACACCAAGTATCATTCATGCCTAG
AA sequence Show only first row Show all	>Lus10013774 pacid=23169090 polypeptide=Lus10013774 locus=Lus10013774.g ID=Lus10013774.BGIv1.0 annot-version=v1.0 MSPSKNNTTPSSPNLPLKVRLLFALHSFGVNLSRQPWLSRRRDTTVTVNRTILNLVDLKSPPPSSKKPYKGVTAFDVTVDPTRNLWFRLYRPAEAAENGR PFLPVVVYFHGGGFMSMGADSKFYDVFCRSVARETPAVVVSVNYRLTPEHRWPRQYEDGLDLLKYIDGRIVDFKRDYGVDVDFGRCFLAGDSAGGNLAHH VAVRAASSDDLKHLKIAGLIAIQPFFGGEERTESEIKVVGVPVITMELTDWAWKAFLPEGSDRDHPAANVSGPNGVDIKGLVRFPTATLVVVGGFDPLQD WQRRYYEWLKKSGKTVELLEIPSAIHAFYTMPELPENLLLLKHIKDFVQTPSIIHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10013774 [exp]	0	1
					Lus10027144 [exp]	15.1	0.8850
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10006885 [exp]	18.7	0.8673
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	21.8	0.8525
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10007326 [exp]	42.4	0.8325
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10035186 [exp]	42.7	0.8518
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10015975 [exp]	43.5	0.8613
AT4G35680			Arabidopsis protein of unknown...		Lus10028380 [exp]	46.0	0.8362
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	47.1	0.8223
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	75.6	0.8419
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10039894 [exp]	96.8	0.8251

Compare expression of checked genes

Lus10013774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.