Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33420 633 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 223 / 3e-63 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 217 / 7e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 217 / 9e-61 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G07714 91 / 1e-20 transcription factor-related (.1) ATMG00550 66 / 2e-12 ATMG00550.1, ORF160 unknown protein AT1G32810 62 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.2) AT4G10600 58 / 5e-09 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039160 [exp] 1226 / 0 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030773 [exp] 220 / 9e-62 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013251 [exp] 219 / 2e-61 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10010966 [exp] 215 / 7e-60 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 214 / 2e-59 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017342 [exp] 64 / 4e-10 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092000 [exp] 736 / 0 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G134700 [exp] 593 / 0 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 593 / 0 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 591 / 0 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G135200 [exp] 251 / 3e-73 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G101300 [exp] 250 / 3e-73 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 224 / 2e-63 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G152600 [exp] 61 / 4e-09 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.001G448900 [exp] 58 / 2e-08 AT4G10600 195 / 3e-56 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10013775 pacid=23169099 polypeptide=Lus10013775 locus=Lus10013775.g ID=Lus10013775.BGIv1.0 annot-version=v1.0 ATGGTGATGACCAACAACAGACCACTCAAGAGAGCAAGAAGGAACAGGATCACCGCCGACCTCCACGACTTCCTCTTCTTCCCCGCCGGGGAAGGCGCCG ACCTTAAGCCGCCGCCGGCCGGGGCGCCCTGGGTNNGCGGCGGCGGCGGGAGGACCCTTCAGGGACGCAGTAAAAGCCTTTTTAACGAACCACGCGCGCC TCACGTTCCCTCCTTCCCTCTTCCCTTCTCTCCTGACCTGGCAAATAGTCTTCCGCGTCGGAGATCTAGTCGACGGACCAGATCTCTCCCCTCTCGTCGT CGCTCTCGATATCGTCGAGGAGGACGTGACCAGATCTCCCAGATCTGTTTACTGCGAGGCTGGCCCAGTCATCCGGTGGGTCGGAAGCGGTACCTTTTCA TCGTGAGAGCCACCGGCGGTGGAAGCAGCTCGTCGGAGGGGTTTCAGAAGCTGTGTACCAAATGCGGGAACTCCCTCCAACTGTCGGACTGCAGGTGCAA GTGGTGCGACTTTGTGGTTACTGCAGACGATTTGGAGGAGTGGGTTTACACCCAGCTTGAAGACACTACTCACTTGCTTCACGGTGTAGTCCACTCGAAT GGTTTCGGCCATCTTTTGAGGGTCAACGGTAAAGAAGGTGGCTCTCAGGCTCTTACCGGAACTCATATCATGAACTTCTGGGATCGACTCTGCAGTGCTC TCTCTGTCAGGAAGGTATCGGTCATGGATGTTTCAAAGAAGTATGGTACTGAGTACAGGTTGCTTCATGCCATCACCAAGGGACATTCATGGTATGGAAA CTGGGGTTATGAGTTTGGAAACGGAAGCTATGCCCTGAAATCCGAAGCTTACCGGGGAGTAGTTGAGACTCTTTCGGGTGTGGCTTTAGATCAGCTCTCT TTCCATGGACGAGGGCCACGGTCTCGACTGCAGGCAGCAATTGCTTTCTACAAGTCATTGTCGACCTCCGAGCTCGTGACACTGAAAGATCTCTTCACGT TCTTGCTGAGGCTGATTCGAGAAACTACTGGGATGTCGGGGTCCAAATTGAATGTGGCAGAGAATGATTCGGGGTCTTCGAGGGTGTTGTGTGCTTGGAC GAGGAGTGATGTTGAGGAGGTGCAGCAGTCTATGATCAAGGTGTTGGCAGCAGCATCTAGTGAGACCAAATGGGTGGCCAGGCACACTCTTAAGGGTGTC ATGTGCCAGAAAGCGTCTCCTGAGCTACTCAACTACTCCCTCGCACACCTGGAAGGAATGTTGGCTCCGAAGGACATGGTGGTTCGGGCACGATGCAGTC CTGCTTCGTATGATGTTGAATTCAGGTTGGAGCCTGCTTCCACATCGCGTCAAGGACTGCACCCTTGCTATCCATGGAAAGAGCAGATCAAATCAGACCT GAAATTCTTGTTTGATTCACTGATCAACCCTGAGACAATGGAGAAATTTAGACCATCAGTGACAAGGCAAGCAGTGATCGACTCTGCAACCAAGCTTATT GACTGCAAACAATTTATTAAGGACTTCAAACCTGAAAAACAGCTTGTAAATTATTCCTCGAGTATTTACCTCATGTGTCATGTTGAGCTCTTTGACCAAT CGAGGGAGGAGCCTGCAATACCTCCGGAACTACTGGTATTGCCTTCGAGTGCCACAGTTGCTAGCCTTAAGAGTGAAGCTGGCAAAGCTTTCCAGGAAGT GTATGCCATGTGTAAAAGGCTTCAGATTGATGGGCTGCTTGAATATGGCTCCGTGGAGGATTCCTTTACCCTGAAGTTTCTGATTGGATCAACTGGAACC GTGAGGATGAAGGGGACGTGCTCATCCAAAAGTGCAGTCAACCGTTACCGAATGGAGCGGGGGACTGAGAAATGGACTGTAGATTGCACTTGTGGGGCAA AGGACGATGATGGCGAGAGGATGCTGGCTTGTGACTCTTGTGGTGTCTGGCAGCATACTAGGTGTGCTGGGATCGAAAATTGTGATCCTACTCCGGATAA GTTTTTGTGTATAAGATGCAAGAGCTTCTTATATGAAAAGAGGTCGGATTCTGATGCTGGTACTGAACAGTCATCTGAAAGGTCCTCTCCAGACAAGATG TCCACTTGCAGGGGAAAGGAAGCTGCAACAAACAAAATGGAGAGTAATGAGCTAACTTTGACTTTCAGCGTAGGGTAA
AA sequence Show only first row Show all	>Lus10013775 pacid=23169099 polypeptide=Lus10013775 locus=Lus10013775.g ID=Lus10013775.BGIv1.0 annot-version=v1.0 MVMTNNRPLKRARRNRITADLHDFLFFPAGEGADLKPPPAGAPWXXGGGGRTLQGRSKSLFNEPRAPHVPSFPLPFSPDLANSLPRRRSSRRTRSLPSRR RSRYRRGGRDQISQICLLRGWPSHPVGRKRYLFIVRATGGGSSSSEGFQKLCTKCGNSLQLSDCRCKWCDFVVTADDLEEWVYTQLEDTTHLLHGVVHSN GFGHLLRVNGKEGGSQALTGTHIMNFWDRLCSALSVRKVSVMDVSKKYGTEYRLLHAITKGHSWYGNWGYEFGNGSYALKSEAYRGVVETLSGVALDQLS FHGRGPRSRLQAAIAFYKSLSTSELVTLKDLFTFLLRLIRETTGMSGSKLNVAENDSGSSRVLCAWTRSDVEEVQQSMIKVLAAASSETKWVARHTLKGV MCQKASPELLNYSLAHLEGMLAPKDMVVRARCSPASYDVEFRLEPASTSRQGLHPCYPWKEQIKSDLKFLFDSLINPETMEKFRPSVTRQAVIDSATKLI DCKQFIKDFKPEKQLVNYSSSIYLMCHVELFDQSREEPAIPPELLVLPSSATVASLKSEAGKAFQEVYAMCKRLQIDGLLEYGSVEDSFTLKFLIGSTGT VRMKGTCSSKSAVNRYRMERGTEKWTVDCTCGAKDDDGERMLACDSCGVWQHTRCAGIENCDPTPDKFLCIRCKSFLYEKRSDSDAGTEQSSERSSPDKM STCRGKEAATNKMESNELTLTFSVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10013775 [exp]	0	1
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	4.2	0.8180
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	5.5	0.8057
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	8.9	0.8067
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	9.2	0.7826
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	10.2	0.7991
AT5G21080			Uncharacterized protein (.1)		Lus10016400 [exp]	13.5	0.7609
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	15.7	0.7730
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	16.2	0.7310
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	20.6	0.7670
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	21.0	0.7637

Compare expression of checked genes

Lus10013775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.