Plant FIBer expression Database

Lus10013776 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33500 100 / 6e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039159
[exp]
227 / 6e-76 AT1G33500 99 / 5e-25 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G095400
[exp]
87 / 1e-20 AT1G33500 216 / 2e-69 unknown protein
PFAM info
Representative CDS sequence
>Lus10013776 pacid=23169133 polypeptide=Lus10013776 locus=Lus10013776.g ID=Lus10013776.BGIv1.0 annot-version=v1.0
ATGCGGATCAGCAATGGTGAATCTGCAGATGTTGAAAATCAAGCAGCGCATGCATCTATGGAGGAGCACACTCCCCTTGCTACTATTAACGCCATGGAGA
ACGATCTCAACTTTGTAGTAGCAGAGAAGAAACAGTTCAATGAAGATTTAGGGAAGATGTCAACTGCTGAAGCTCAGATGTGCTCACAGATACTGGAAAA
ACAAAAGAAGCTTGCGTCTCTGGAGTTAGACTCCTCAACTCTTACCCAGGGTAGTGAAGATGAGGAGGAGTTTATGGGCAAGTTGGAATCCGAGAAGTGC
AAGCTGAATGATATTACACGGATGAAAAACAAACTTATTACGAAGAACGCTAAGATCCTTGATTGGTTCCCTTCAATTCAGATGAAGCAGTCTATTGATG
AGTTGCTATGCAGACTGAATGAGAGTATGCCCGAGCTGATGAAAATGGACATGAAGAACCTCGAAGAGGAGTATAATGGGTTTTTGTCTGATAAGGCTGG
AGAAATGGACTATTTCCAATCTCTGGAAACGCAAATTAAGAAACTTAAGGTAAATGTTACTTGCAAATACTAG
AA sequence
>Lus10013776 pacid=23169133 polypeptide=Lus10013776 locus=Lus10013776.g ID=Lus10013776.BGIv1.0 annot-version=v1.0
MRISNGESADVENQAAHASMEEHTPLATINAMENDLNFVVAEKKQFNEDLGKMSTAEAQMCSQILEKQKKLASLELDSSTLTQGSEDEEEFMGKLESEKC
KLNDITRMKNKLITKNAKILDWFPSIQMKQSIDELLCRLNESMPELMKMDMKNLEEEYNGFLSDKAGEMDYFQSLETQIKKLKVNVTCKY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G33500 unknown protein Lus10013776
[exp]
0 1
AT2G43820 SGT1, ATSAGT1, ... UDP-glucose:salicylic acid glu... Lus10020559
[exp]
4.0 0.8734
AT5G03790 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeo... Lus10008641
[exp]
4.7 0.8760
AT4G39490 CYP96A10 "cytochrome P450, family 96, s... Lus10022277
[exp]
9.5 0.8618
AT5G33340 CDR1 CONSTITUTIVE DISEASE RESISTANC... Lus10041151
[exp]
11.7 0.7965
AT2G32350 Ubiquitin-like superfamily pro... Lus10039679
[exp]
12.5 0.8480
AT1G73990 SPPA1, SPPA signal peptide peptidase (.1) Lus10013336
[exp]
14.6 0.8591
AT3G18010 HD WOX1 WUSCHEL related homeobox 1 (.1... Lus10018011
[exp]
15.0 0.8501
AT3G57270 BG1 "beta-1,3-glucanase 1", beta-1... Lus10007208
[exp]
16.7 0.8205
AT1G30670 bHLH bHLH052 basic helix-loop-helix (bHLH) ... Lus10005451
[exp]
17.0 0.8236
AT3G44830 Lecithin:cholesterol acyltrans... Lus10043360
[exp]
19.6 0.8279

Lus10013776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.