Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71340 253 / 2e-81 AtGDPD4 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1) AT1G33490 231 / 1e-74 unknown protein AT4G10140 218 / 2e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039158 [exp] 395 / 1e-136 AT1G71340 400 / 3e-140 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1) Lus10039157 [exp] 308 / 9e-105 AT1G33490 244 / 1e-83 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G095300 [exp] 290 / 1e-95 AT1G71340 385 / 4e-134 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1) Potri.013G095200 [exp] 244 / 5e-80 AT1G33490 260 / 5e-90 unknown protein Potri.003G048300 [exp] 236 / 1e-76 AT1G33490 260 / 1e-89 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10013777 pacid=23169148 polypeptide=Lus10013777 locus=Lus10013777.g ID=Lus10013777.BGIv1.0 annot-version=v1.0 ATGGCGACCTCCGGGAGAATAGGAATTAGGAGACAGCAGCCGCAGCCGCAAAAGCTCTACCAAAGGCACGGCGGTTTCTTTCGAGGAGTATTCGGACGTA ACAACAATCGGCCATTATTCCCAGCTTCTTTTAGGCTTCTCTCTTCTCGGAAAACATTCCGTCTCGTTATAGCGGTGCTGGCTTTCATCGCTCTTGCTCC TCCGGTCTTCTTCCACTTCAGGCTCCGCCGCTTCCAGCAGATGCAATCAAGAAAATGCGGATGGTTGAATCATCCCCCGCTTGTTTGTGCTCATGGTGGC GATACAACTAATGCATTTCCCAACACGGTGGCAGCCTACCAGCTGGCTCTTCGCTCCCAGGTAGATTGTATTGAGATTGATGTTTCTCGTTCCTCTGATG GAGTTCTGTTTGCGCTCCATGACAGGGATTTGCAGAAGATATCTCGTAATAGTACCTCCAGAGTTGGTCACTTGACTATGAAAGAGATAAAGGAGCTAGA TGTATCTCATCAATCTGCTCTAGACATCGGTGAGCAAAAGATCCCCACTATTGTCGATGCTTTGAAGTTGGTATCAAGTTCTGTTCGGCAGGTGATTCTG GATGCCAAAGTTGGACCCCTGTTTTACGAAGATGGACTTGCAAAAGACATTCTTTCTATAGTGGGATACATTGTGATGGTGGATCCTAATACCGGCAGGA GAAGCGACCTATTGAGAATAAAAGAGGCCGGAGTGGTTGGCGTTTCCCATCGACTAGTGAATGAACGGCTTGTGAGGCTTCTCCATGGAGGTACGGAACC AAAGCAACTAGCATTTTCTGCAGCTCTTGGTTTTACCCTAGGAGTCTTTCCTATATGTGGAGTCACTGCTGTGCTGTGTGGAATGGCAATCGCATTTCTT GGATCCCGATGCCATGCTCCGACTGTGATGTTAGCTAACCTTGTTGCAACTCCTATTGAATTGAGCCTTGTTGTACCCTTCTTGCGCTTTGGAGAACTTA TATTTGGTGGACCTCATTTTCCATTGACATCTGATGCTTTGAAGAAGGTCTTCACTGGGCAAGCTTCTCGTGAGGTCCTTCTAAGCATTATGCATGCGCT AATGGGATGGCTTATCGCAGCTCCAGCCGTCTTGGGTGCTCTGTATGTGATATTTTTGCCATGTTTCAAGGTATTGGTTGTCAAGTTCCGTAGTGCACCA TCAAGCCCAAGGCAGAGCTTGCTGTCAGAAGTCACCCTCAAGGTAAGAGATTGA
AA sequence Show only first row Show all	>Lus10013777 pacid=23169148 polypeptide=Lus10013777 locus=Lus10013777.g ID=Lus10013777.BGIv1.0 annot-version=v1.0 MATSGRIGIRRQQPQPQKLYQRHGGFFRGVFGRNNNRPLFPASFRLLSSRKTFRLVIAVLAFIALAPPVFFHFRLRRFQQMQSRKCGWLNHPPLVCAHGG DTTNAFPNTVAAYQLALRSQVDCIEIDVSRSSDGVLFALHDRDLQKISRNSTSRVGHLTMKEIKELDVSHQSALDIGEQKIPTIVDALKLVSSSVRQVIL DAKVGPLFYEDGLAKDILSIVGYIVMVDPNTGRRSDLLRIKEAGVVGVSHRLVNERLVRLLHGGTEPKQLAFSAALGFTLGVFPICGVTAVLCGMAIAFL GSRCHAPTVMLANLVATPIELSLVVPFLRFGELIFGGPHFPLTSDALKKVFTGQASREVLLSIMHALMGWLIAAPAVLGALYVIFLPCFKVLVVKFRSAP SSPRQSLLSEVTLKVRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10013777 [exp]	0	1
AT3G09085			Protein of unknown function (D...		Lus10017182 [exp]	3.5	0.8491
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	4.0	0.8833
AT3G43660			Vacuolar iron transporter (VIT...		Lus10035086 [exp]	5.9	0.8450
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10043301 [exp]	6.0	0.8538
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	6.9	0.8538
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10041368 [exp]	9.5	0.8488
AT5G26990			Drought-responsive family prot...		Lus10015214 [exp]	10.7	0.8465
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	15.5	0.8320
AT3G58090			Disease resistance-responsive ...		Lus10025274 [exp]	16.3	0.7301
AT4G17250			unknown protein		Lus10000731 [exp]	17.1	0.7982

Compare expression of checked genes

Lus10013777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.