Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10340 393 / 7e-139 LHCB5 light harvesting complex of photosystem II 5 (.1) AT1G29930 186 / 1e-57 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) AT1G29920 186 / 2e-57 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 186 / 2e-57 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT2G05070 185 / 3e-57 LHCB2.2 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) AT2G05100 184 / 3e-57 LHCB2.3, LHCB2.1 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) AT3G27690 183 / 1e-56 LHCB2.3, LHCB2:4 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) AT2G34430 183 / 2e-56 LHCB1.4, LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 (.1) AT2G34420 182 / 2e-56 LHCB1.5, LHB1B2 PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5, photosystem II light harvesting complex gene B1B2 (.1) AT5G54270 172 / 2e-52 LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, light-harvesting chlorophyll B-binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039156 [exp] 449 / 1e-160 AT4G10340 425 / 1e-151 light harvesting complex of photosystem II 5 (.1) Lus10008594 [exp] 192 / 4e-60 AT1G29930 445 / 4e-160 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10008191 [exp] 192 / 5e-60 AT1G29910 452 / 5e-163 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10042219 [exp] 191 / 1e-59 AT1G29930 444 / 1e-159 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10001169 [exp] 187 / 7e-58 AT3G27690 484 / 1e-175 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10001741 [exp] 186 / 8e-58 AT3G27690 481 / 1e-174 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10027966 [exp] 186 / 2e-57 AT1G29910 446 / 2e-160 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10037875 [exp] 176 / 8e-54 AT5G54270 460 / 3e-166 light-harvesting chlorophyll B-binding protein 3 (.1) Lus10038575 [exp] 175 / 2e-53 AT5G54270 462 / 9e-167 light-harvesting chlorophyll B-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063101 [exp] 403 / 1e-142 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1) Potri.005G239300 [exp] 193 / 2e-60 AT2G34430 485 / 4e-176 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.005G239200 [exp] 193 / 2e-60 AT2G34430 484 / 2e-175 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.011G079500 [exp] 191 / 7e-60 AT2G34430 480 / 6e-174 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.002G221400 [exp] 190 / 2e-59 AT2G05070 499 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) Potri.002G189300 [exp] 190 / 3e-59 AT2G34430 448 / 2e-161 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.014G165100 [exp] 188 / 2e-58 AT2G05100 507 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) Potri.011G126700 [exp] 173 / 3e-53 AT5G54270 446 / 3e-161 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.001G407100 [exp] 174 / 6e-53 AT5G54270 478 / 2e-173 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.005G258600 [exp] 156 / 2e-45 AT1G76570 491 / 6e-176 Chlorophyll A-B binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10013778 pacid=23169134 polypeptide=Lus10013778 locus=Lus10013778.g ID=Lus10013778.BGIv1.0 annot-version=v1.0 ATGGCGGCTTATTTGGCATCTTCGGCGGCGTCGCTAGGGAAATCGGAGATGTTCGGCAACTCTCTGAATTTGAACGGAAGCAGGTCTCCTGCAGCCTCCA CTACTACTTCGGCATTCAAAGCCGTTGCTCTCTTCGACAGGTTCAAGAAGACTACCACTCCTCCGCCGCCAAAGAAAAAGGCTGCCGCCGCCGCCGCCGT TTCCCCCGCCACCGATGAACTCGCCAAGTGGTACGGCCCGGACAGAAGGATCTTCCTACCCGACGGATTGTTGGACAGGTCTGAGATCCCAGAGTACTTG AACGGAGAAGTCCCTGGCGACTATGGTTATGACCCATTTGGTCTGAGCAAGAAGCCAGAAGACTTCGCCAAGTACCAAGCGTTCGAGTTGATCCACGCCA GGTGGGCTATGCTTGGAGCAGCTGGATTCATCATCCCTGAAGCTTTCAACAAATTCGGTGCTAACTGTGGCCCTGAGGCTGTCTGGTTCAAGACAGGTGC TCTGCTCCTAGACGGGAACACCCTTAACTACTTCGGCAACAACATCCCAATCAACCTAGTCGTCGCCGTCGTAGCAGAAGTCGTCCTTCTCGGCGGTGCT GAATACTACAGAATCACAAACGGCTTGGAATTCGAGGACAAGCTCCACCCGGGCGGGCCGTTCGACCCGCTGGGGCTGGCGGAAGACCCGGACCAGGCAG CGCTGCTGAAGGTGAAGGAGATCAAGAACGGGAGACTAGCAATGTTTGCAATGCTGGGTTTCTACTTCCAAGCTTACGTGACAGGGGAAGGTCCGGTGGA GAACCTTGCTAAGCATCTCAGCGACCCTTTCGGAAACAACCTGCTTACTGTCCTTTCTGGTTCTGTTGAGAGAGTCCCTACTCTCTAA
AA sequence Show only first row Show all	>Lus10013778 pacid=23169134 polypeptide=Lus10013778 locus=Lus10013778.g ID=Lus10013778.BGIv1.0 annot-version=v1.0 MAAYLASSAASLGKSEMFGNSLNLNGSRSPAASTTTSAFKAVALFDRFKKTTTPPPPKKKAAAAAAVSPATDELAKWYGPDRRIFLPDGLLDRSEIPEYL NGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLVVAVVAEVVLLGGA EYYRITNGLEFEDKLHPGGPFDPLGLAEDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVLSGSVERVPTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10013778 [exp]	0	1
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10039156 [exp]	1.0	0.9895
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10018528 [exp]	2.0	0.9402
AT1G26220			Acyl-CoA N-acyltransferases (N...		Lus10013061 [exp]	4.9	0.9138
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10002710 [exp]	5.0	0.9154
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10021730 [exp]	7.7	0.9170
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	8.1	0.9177
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10041502 [exp]	9.5	0.9083
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10023321 [exp]	10.0	0.8936
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10033819 [exp]	10.6	0.9129
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10001644 [exp]	12.0	0.9114

Compare expression of checked genes

Lus10013778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.