Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48140 320 / 6e-107 Pectin lyase-like superfamily protein (.1) AT3G07820 318 / 6e-106 Pectin lyase-like superfamily protein (.1) AT3G07830 313 / 7e-104 Pectin lyase-like superfamily protein (.1) AT3G07840 311 / 2e-103 Pectin lyase-like superfamily protein (.1) AT3G14040 297 / 3e-97 Pectin lyase-like superfamily protein (.1) AT3G07850 293 / 1e-95 Pectin lyase-like superfamily protein (.1) AT2G43870 260 / 1e-83 Pectin lyase-like superfamily protein (.1) AT2G33160 268 / 3e-83 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) AT3G59850 256 / 4e-82 Pectin lyase-like superfamily protein (.1) AT1G02790 254 / 6e-81 PGA4 polygalacturonase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013784 [exp] 728 / 0 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 701 / 0 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 396 / 7e-137 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 350 / 2e-118 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 357 / 6e-117 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 344 / 2e-115 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 343 / 2e-115 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10009605 [exp] 333 / 5e-109 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10043087 [exp] 277 / 3e-92 AT3G07840 268 / 4e-89 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067166 [exp] 377 / 5e-129 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 377 / 5e-129 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 377 / 5e-129 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 376 / 1e-128 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 369 / 8e-126 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 369 / 8e-126 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 369 / 8e-126 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 330 / 1e-110 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 280 / 1e-90 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G202100 [exp] 273 / 3e-88 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10013780 pacid=23169042 polypeptide=Lus10013780 locus=Lus10013780.g ID=Lus10013780.BGIv1.0 annot-version=v1.0 ATGAAGAAAACAGGCTCCATCATGACCACGTTATTGCTTCTACTTTTGGTTACATTTGCAAACGTGGTCAGTGCCCAACGTGGTGCAGCTCAACCCGGCA TGCCAGTGGGTGGAGCCGCACCACCAGCCGGTGGCGTGTTTGATATATGCAAATATGGTGCAGTAGCCGATGAGAAAACAGACATTACTCAAGCGCTAAC AAAAGCATTTAAAGAGGCATGCGCATCAACCGCACCCGCAACAGTACTAATTCCACCGGGCAACTACTTATGCGGCCAAACCGACTTGAAAGCCCCTTGC ACAGCTCCTTCGATCACCTTCCAAGTCCAGGGAACTATTAGGGCCCCTTCAAACATTGCTGGTGATACTTGGTTCCTCTTTGACAACATCAACAACTTGA ACATCGTTGGTGGTGGCATTTTCGATGGCCAAGGTCCCACCTGTTACAAGACCAAGAAGTCCGTTGCTGTGAGTATAAGGTTGAACTACGTGACAAATGC AATGATTCAAGGAATAACAAGCAGGGACAGCAAGCAATTCCACTTCATAGTAATTGGAGGAAAGAACATCACTTTCGACCAACTCACAATAACCGCGGCT GGAGACAGTCCCAACACCGACGGAATCCACTTGGGAAGAGCTTCCCAAATAAACATCCTTAACACCAACATCGGAACAGGAGACGATTGCATCTCTGTCG GAGATGGAGTTTCAGATCTCAACGTCCAGAACGTGACGTGTGGACCCGGCCATGGAATCGCAGTGGGTAGTTTGGGAAGGTACGCTAACGAGGCACCGGT GAAAGGAATCCACTTCAAGAACTGCACGTTGACAAACACATGCAATGGTGTGAGAATCAAATCATGGCCTGATCTGGAGACAGGTTCTGCAACCGATATA AGCTTCGAAGACATCATCATGAACAACGTCTCTTTCCCGATCGTCATCGATCAAGTTTATTGCCCCTGGAACACGTGCAAGAAAACAGGGTTGCCGTCGA AAGTGAAAATATCGGGAGTGACATACAACAACATACAAGGGACATCTGCAACGCCGCAGATAATACAAATGAATTGCAGTTCAGCAAACCCCTGCGAGGA TGTTAAACTCTCCAATATCAACATTCAATCTCCTACTGGCCCTGCTGTCTCTGCTTGCGCCAACGTCAAACCTATCGTTACCGGCACCATCCCTCCTGGT TGCGCCTAA
AA sequence Show only first row Show all	>Lus10013780 pacid=23169042 polypeptide=Lus10013780 locus=Lus10013780.g ID=Lus10013780.BGIv1.0 annot-version=v1.0 MKKTGSIMTTLLLLLLVTFANVVSAQRGAAQPGMPVGGAAPPAGGVFDICKYGAVADEKTDITQALTKAFKEACASTAPATVLIPPGNYLCGQTDLKAPC TAPSITFQVQGTIRAPSNIAGDTWFLFDNINNLNIVGGGIFDGQGPTCYKTKKSVAVSIRLNYVTNAMIQGITSRDSKQFHFIVIGGKNITFDQLTITAA GDSPNTDGIHLGRASQINILNTNIGTGDDCISVGDGVSDLNVQNVTCGPGHGIAVGSLGRYANEAPVKGIHFKNCTLTNTCNGVRIKSWPDLETGSATDI SFEDIIMNNVSFPIVIDQVYCPWNTCKKTGLPSKVKISGVTYNNIQGTSATPQIIQMNCSSANPCEDVKLSNINIQSPTGPAVSACANVKPIVTGTIPPG CA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48140			Pectin lyase-like superfamily ...		Lus10013780 [exp]	0	1
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	3.5	0.9676
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	6.2	0.9622
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10012743 [exp]	6.7	0.9430
AT5G48140			Pectin lyase-like superfamily ...		Lus10013784 [exp]	9.1	0.8779
					Lus10019410 [exp]	10.5	0.9457
					Lus10032468 [exp]	11.2	0.9466
AT4G16195			Plant self-incompatibility pro...		Lus10008107 [exp]	12.2	0.9413
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	12.5	0.9462
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	12.7	0.9171
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	12.8	0.9410

Compare expression of checked genes

Lus10013780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.