Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33470 162 / 1e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22910 146 / 7e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G46780 124 / 2e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G43980 106 / 7e-29 Ribosomal protein S14p/S29e family protein (.1) AT3G44010 106 / 7e-29 Ribosomal protein S14p/S29e family protein (.1) AT4G33865 106 / 7e-29 Ribosomal protein S14p/S29e family protein (.1) AT1G20880 105 / 5e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G76460 103 / 2e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G22330 101 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G54770 85 / 6e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039151 [exp] 402 / 3e-141 AT1G33470 182 / 7e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10013779 [exp] 120 / 4e-34 AT3G44010 102 / 5e-31 Ribosomal protein S14p/S29e family protein (.1) Lus10039155 [exp] 120 / 4e-34 AT3G44010 102 / 5e-31 Ribosomal protein S14p/S29e family protein (.1) Lus10004252 [exp] 125 / 2e-31 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1) Lus10030202 [exp] 110 / 2e-27 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002684 [exp] 106 / 5e-26 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10041423 [exp] 99 / 2e-23 AT3G54770 181 / 3e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10036503 [exp] 97 / 4e-23 AT3G54770 156 / 5e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 58 / 5e-09 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068400 [exp] 246 / 3e-80 AT1G33470 246 / 7e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.013G094400 [exp] 240 / 1e-77 AT1G33470 257 / 3e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G179100 [exp] 130 / 4e-35 AT2G46780 275 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G105101 [exp] 123 / 3e-32 AT2G46780 252 / 4e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G090000 [exp] 114 / 8e-32 AT4G33865 104 / 1e-31 Ribosomal protein S14p/S29e family protein (.1) Potri.005G256700 [exp] 120 / 1e-31 AT1G76460 335 / 5e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G004600 [exp] 120 / 2e-31 AT1G76460 377 / 9e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G295902 [exp] 113 / 2e-31 AT4G33865 108 / 1e-33 Ribosomal protein S14p/S29e family protein (.1) Potri.002G119600 [exp] 112 / 3e-31 AT4G33865 108 / 2e-33 Ribosomal protein S14p/S29e family protein (.1) Potri.014G017701 [exp] 112 / 3e-31 AT4G33865 108 / 2e-33 Ribosomal protein S14p/S29e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00253 [flax] [poplar] Ribosomal_S14 Ribosomal protein S14p/S29e CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10013781 pacid=23169056 polypeptide=Lus10013781 locus=Lus10013781.g ID=Lus10013781.BGIv1.0 annot-version=v1.0 ATGGGACATCAGAACGTATGGAACTCTCACCCGAAAACTTACGGTCCAGGCTCCAGGGCCTGCCGTGTCTGCGGGAACCCTCATGCCATCATCAGGAAGT ACGGGCTGATGTGCTGCAGGCAGTGCTTCCGTAGCAATGCTAAGGAGATTGGTTTCATCAAGAGAAATGAGCAGCACGCCGGCGGCGAAGTCGGGTGGCG GCGGCGGCGGAAGTCAATTTGGGGACACGACTTACACGAAAGTGTTCGTCGGAGGGCTAGCTTGGGAGACCCACAAAGACAACATGGAGAAGTACTTCGA GTGAAGAAGTACTTCGAGCAGTTCGTCAGCAGAGTGGCGGCTGTCGTCATCACTGATAAGGCCACCGGCAGATCCAAGGGCTACGGATTCGTGACTTTTC GGGAAGCGGAAGCGGCCATGAAAGCCTGTGTGGATGCAGCTCCGGTGATAGACGGAAGAAGGGCTAACTGCAATCTTGCTTCTTTAGGTGTTCAGAGATC CAAACCCTCCACCCCAAAGCAGCACGCCTCCGCCGCTGGGAGGAGCTTTAAGGTAATGAGCTCTTTTCAGACAGCTGGTGGTGGAGGAGGAGCAGCTTTT CCTTCTGCAGCAGCTTTCCCACATTATGCTATTCAACAAGGGATACCTTATAATGTTTATGGGTACTCTGCCTATTCGCCAGACTATGCTTACCCAACGA GCTACTATAGTGTATATGGAGGAGGATCTCCAATTTATGGAAGTCATGGAGTAGGAGCTGGAGGTGTGTTTACTAATGGTGGAGCCAGCTTTTACCCGTT CCTACAGTATGGTGGCGACAGTGGCAGCACAGCTGCTACTGCGTATACCTCCGGAGCTATGGGGCAAACCTACAGTTTCCAACAGTACCCTCATGGTCAT AACCATGCCAATCAATACCACAACCTTTTCCAATATTCGGCCATCAATTCAGCTGGAAGTGGTGGCCTGGGATACCCTCAACATTACGGGAATCCCATGC CATCATCTCTCCCACACCCCACAACCCTGCAACCAGGTGTGACCATGGCTCTTCATCAACATCCCGCTCTGCCGGTCCCTCAATATCGATAG
AA sequence Show only first row Show all	>Lus10013781 pacid=23169056 polypeptide=Lus10013781 locus=Lus10013781.g ID=Lus10013781.BGIv1.0 annot-version=v1.0 MGHQNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFIKRNEQHAGGEVGWRRRRKSIWGHDLHESVRRRASLGDPQRQHGEVLR VKKYFEQFVSRVAAVVITDKATGRSKGYGFVTFREAEAAMKACVDAAPVIDGRRANCNLASLGVQRSKPSTPKQHASAAGRSFKVMSSFQTAGGGGGAAF PSAAAFPHYAIQQGIPYNVYGYSAYSPDYAYPTSYYSVYGGGSPIYGSHGVGAGGVFTNGGASFYPFLQYGGDSGSTAATAYTSGAMGQTYSFQQYPHGH NHANQYHNLFQYSAINSAGSGGLGYPQHYGNPMPSSLPHPTTLQPGVTMALHQHPALPVPQYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10013781 [exp]	0	1
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	2.0	0.8641
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10041571 [exp]	2.4	0.8288
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	2.8	0.8540
					Lus10008645 [exp]	3.3	0.7814
AT4G13800			Protein of unknown function (D...		Lus10022549 [exp]	4.2	0.7867
AT2G40480			Plant protein of unknown funct...		Lus10029056 [exp]	6.2	0.7784
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	6.3	0.8244
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	6.5	0.7996
AT2G17550			unknown protein		Lus10016693 [exp]	10.2	0.7892
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	12.6	0.7866

Compare expression of checked genes

Lus10013781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.