Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07820 72 / 4e-15 Pectin lyase-like superfamily protein (.1) AT3G59850 68 / 1e-13 Pectin lyase-like superfamily protein (.1) AT1G78400 67 / 2e-13 Pectin lyase-like superfamily protein (.1) AT2G33160 67 / 2e-13 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) AT1G02790 66 / 5e-13 PGA4 polygalacturonase 4 (.1) AT2G43890 64 / 2e-12 Pectin lyase-like superfamily protein (.1) AT1G17150 64 / 2e-12 Pectin lyase-like superfamily protein (.1) AT1G05650 64 / 4e-12 Pectin lyase-like superfamily protein (.1) AT5G48140 63 / 4e-12 Pectin lyase-like superfamily protein (.1) AT1G43090 63 / 7e-12 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013784 [exp] 204 / 4e-65 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 204 / 4e-65 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 197 / 4e-62 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 101 / 2e-25 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 99 / 4e-25 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 96 / 2e-23 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 86 / 6e-20 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 86 / 6e-20 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10002931 [exp] 84 / 3e-19 AT3G07820 233 / 6e-73 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G066800 [exp] 79 / 1e-17 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 79 / 1e-17 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 79 / 1e-17 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.002G202200 [exp] 77 / 5e-17 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1) Potri.002G202100 [exp] 77 / 5e-17 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1) Potri.019G067100 [exp] 76 / 2e-16 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 76 / 2e-16 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 76 / 2e-16 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067166 [exp] 76 / 2e-16 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 75 / 3e-16 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10013783 pacid=23169041 polypeptide=Lus10013783 locus=Lus10013783.g ID=Lus10013783.BGIv1.0 annot-version=v1.0 ATGGAGAAAACAGGTTCTGGTAGTAGCATCATGGCAACGTTCTTGCTCCTGGTTTTGTTTACATTTGCAAACGTGGTTAGTGCCCAACGTGGTGCGGCTC AACCCGGCATGCCGGAAGCTGGTGGAGCCGCACCACCCGCCGGTGGCGGGTTTGATATATGCAAATATGGTGCAGTAGCCGATGAGAAAACAGACATTAC TCAAGCGCTGACAAAAGCATTTAAAGAAGCATGCGCATCAACAGCACCCGCAACAGTACTAATTCCACCGGGCAACTACTTATGTGGCCAAACCGACTTG AAAGCCCCTTGCACAGCTCCTTCGATCACCTTCCAAGTCCAGGGAACTATTAGGGCCCCTTCAAACATTGCTGGTGATACTTGGTTCCTCTTTGACAACA TCAACAACTTGAACATCGTTGGTGGTGGCATTTTCGATGGCCAAGGTCCCACCTGTTACAAGACCAAGAAATCCGTTGCTGTGGTACGTGTTTGTATGCT ATGA
AA sequence Show only first row Show all	>Lus10013783 pacid=23169041 polypeptide=Lus10013783 locus=Lus10013783.g ID=Lus10013783.BGIv1.0 annot-version=v1.0 MEKTGSGSSIMATFLLLVLFTFANVVSAQRGAAQPGMPEAGGAAPPAGGGFDICKYGAVADEKTDITQALTKAFKEACASTAPATVLIPPGNYLCGQTDL KAPCTAPSITFQVQGTIRAPSNIAGDTWFLFDNINNLNIVGGGIFDGQGPTCYKTKKSVAVVRVCML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07820			Pectin lyase-like superfamily ...		Lus10013783 [exp]	0	1
					Lus10015249 [exp]	12.3	0.5608
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041540 [exp]	16.7	0.5445
AT3G59500			Integral membrane HRF1 family ...		Lus10008752 [exp]	22.0	0.4939
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	30.4	0.4749
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	32.1	0.4747
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	33.4	0.4747
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	34.7	0.4747
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	35.3	0.4741
AT2G03630			unknown protein		Lus10026665 [exp]	36.6	0.5054
					Lus10011218 [exp]	39.3	0.4670

Compare expression of checked genes

Lus10013783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.