Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18110 297 / 2e-91 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03070 133 / 8e-39 NADH-ubiquinone oxidoreductase-related (.1) AT3G06430 58 / 3e-09 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G32630 57 / 5e-09 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 56 / 1e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 54 / 8e-08 PGR3 proton gradient regulation 3 (.1) AT4G16390 54 / 1e-07 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39980 53 / 1e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 52 / 3e-07 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G42310 52 / 3e-07 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039148 [exp] 442 / 1e-153 AT3G18110 688 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039147 [exp] 141 / 7e-42 AT3G03070 154 / 5e-50 NADH-ubiquinone oxidoreductase-related (.1) Lus10004363 [exp] 97 / 6e-25 AT3G03070 87 / 9e-24 NADH-ubiquinone oxidoreductase-related (.1) Lus10024893 [exp] 66 / 7e-12 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018086 [exp] 64 / 2e-11 AT5G50280 337 / 1e-110 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042081 [exp] 65 / 3e-11 AT5G50280 648 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039071 [exp] 62 / 2e-10 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038788 [exp] 59 / 2e-09 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012268 [exp] 58 / 4e-09 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G123900 [exp] 346 / 7e-109 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G036400 [exp] 337 / 1e-105 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G082100 [exp] 137 / 2e-40 AT3G03070 153 / 1e-49 NADH-ubiquinone oxidoreductase-related (.1) Potri.006G019000 [exp] 61 / 5e-10 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G018600 [exp] 59 / 1e-09 AT4G16390 818 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.014G097000 [exp] 58 / 5e-09 AT4G01030 906 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.009G058300 [exp] 56 / 1e-08 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 56 / 1e-08 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G075700 [exp] 56 / 2e-08 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G005100 [exp] 56 / 2e-08 AT4G30825 1121 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0045 [flax] [poplar] Rubredoxin PF10276 [flax] [poplar] zf-CHCC Zinc-finger domain
Representative CDS sequence Show only first row Show all	>Lus10013785 pacid=23169077 polypeptide=Lus10013785 locus=Lus10013785.g ID=Lus10013785.BGIv1.0 annot-version=v1.0 ATGATTAAAATATACCGGAATTCAGGAAACCATGGCAAAGCTGAGAGCCTGTTGAAAGTGATGAAGGATGCAGGAATAGAGCCTACTACTGCAACAATGC ACTTGCTTATGGTGACCTATGGTGCCTCTGGACATCCTAAGGAAGCTGATGAAGTTCTTAACAACTTAAAACACGCAGGTTTAGATCTCAGCACACTGCC GTATGCTTCTGTTATTGAGGCTTATTTTAAGGAAGGAGAGTACAGTGCCGGAATACAGAAACTTGAGGAGTTGAAGAGAGAGGGGTTTGAGGCAGATCAT AGGATATGGACATGCTTTATCAGGGGTGCAAGTTTGGCCGAGCATAGTAATGAAGCCATTAACCTTTCAAGTGCTCTGGCAGATGCAGGGTTTGATCTTC CAGTCAGACTTCTGAGAAAAAGTTCTGATTCACTAGTTCAAGAAGTGGATGATTGTCTTGAGATGCTAGGAACAATGGCAGACAGTGCAGCATTGAACTT TGTAAATGCATTGGAGGATTTGTTATGGGCATATGAACAAAGAGCCTCCGCGTCGTGGGTTTTCCAATTAGCAGTCAAGAGGCGCATCTATCCTCACGAG TTTTGTTTTCCTGTGAGAGGTAGGGTGGCTGACAGTAACTGGGGAGCTGATTTTCGGAAGCTATCGGGGGGTGCAGCTCTTGTCGCTCTTACCTTGTGGC TAGATCATATGCAGGCAAGTACTTATCCAATGCTCTCAAATGGCACTAGGGAGATCACAGAGATGAAAGACACTACTAAGAAATCTCCAATGGAGTTGAT CAACGAAATTCCTCCCATCAAGGTTGAAGGAAGGATTGCCGTTTGTGAAGGGGATACCAACCCTGCACTTGGACATCCAATTGAGTTCATCTGCCTGGAC TTGAAGGAGCCAGCAGTGTGCAAATATTGTGGTCTGCGGTATGTCCAGGATCATCATCATTAG
AA sequence Show only first row Show all	>Lus10013785 pacid=23169077 polypeptide=Lus10013785 locus=Lus10013785.g ID=Lus10013785.BGIv1.0 annot-version=v1.0 MIKIYRNSGNHGKAESLLKVMKDAGIEPTTATMHLLMVTYGASGHPKEADEVLNNLKHAGLDLSTLPYASVIEAYFKEGEYSAGIQKLEELKREGFEADH RIWTCFIRGASLAEHSNEAINLSSALADAGFDLPVRLLRKSSDSLVQEVDDCLEMLGTMADSAALNFVNALEDLLWAYEQRASASWVFQLAVKRRIYPHE FCFPVRGRVADSNWGADFRKLSGGAALVALTLWLDHMQASTYPMLSNGTREITEMKDTTKKSPMELINEIPPIKVEGRIAVCEGDTNPALGHPIEFICLD LKEPAVCKYCGLRYVQDHHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10013785 [exp]	0	1
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10007591 [exp]	4.0	0.7837
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	7.7	0.7689
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10018058 [exp]	9.8	0.7389
AT5G19151			unknown protein		Lus10034040 [exp]	10.2	0.7171
AT5G57860			Ubiquitin-like superfamily pro...		Lus10036598 [exp]	11.6	0.7699
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10019939 [exp]	12.8	0.6830
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10021335 [exp]	13.6	0.7493
					Lus10030382 [exp]	13.7	0.7258
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Lus10037979 [exp]	15.0	0.6974
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Lus10005796 [exp]	15.0	0.7406

Compare expression of checked genes

Lus10013785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.