Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16920 124 / 1e-33 Fasciclin-like arabinogalactan family protein (.1) AT5G26730 69 / 2e-13 Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039146 [exp] 414 / 4e-146 AT5G16920 119 / 1e-31 Fasciclin-like arabinogalactan family protein (.1) Lus10006371 [exp] 84 / 5e-19 AT5G26730 140 / 5e-41 Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049600 [exp] 146 / 7e-42 AT5G16920 154 / 2e-45 Fasciclin-like arabinogalactan family protein (.1) Potri.006G016700 [exp] 69 / 1e-14 AT5G26730 91 / 5e-23 Fasciclin-like arabinogalactan family protein (.1) Potri.016G009000 [exp] 57 / 6e-11 AT5G16920 57 / 1e-11 Fasciclin-like arabinogalactan family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013786 pacid=23169125 polypeptide=Lus10013786 locus=Lus10013786.g ID=Lus10013786.BGIv1.0 annot-version=v1.0 ATGGCCTCATCACTTCTGCAACTGCTACTCCTGCAGTGTGCTGTTGCTTTCATACTATCAGCTGCCGGTCCTGTCTCTGCTGCCCATTCGCTTTCATCAT TATTACCGGCACCAGTATCCGTTCACGACATTTACAGTAATGGTGGTAGTGAAGAAGACAGCCGAGAAGATGACCTCGATGTCGCGACAGAAGAGATGAG GAGAGCTAATTACTTCACGTTTGTGATGCTCCTGAATATGGCGGTTAACAACGGTCAGACTGCCGCCAATGTCACCTTCCTCATGCCGAATGACCGCATC TTGTCCAACATCACTTTCACAACCGAAAACCACGACAAATATGATAATGCATCATCCTCCAACACCGCTACTCCTACATGGTCTGTTCGGGAGTTCATTC TACATCACTCGATCCCATCTCCGTTGCTCTTCGACCATCTATGGCACTTCCCGTCGGGTTCCACCATCCCAAGTTCCCACCTGGGGTACGTGCTTCAGGT CCAAAACGACGACAAGGGACATAAAGATGGGAAATGGTGGAGAAGAAGGGGCAACTTCTCCCTCAACAACGTCAAGATCATCAGCCCGAACATCTGCACA TCTCCTTCCTCTTCCATCCGATGCCATGGCATCGACGGTGTCCTCTATCCGGCCCCAATTTCCCCTCCTCCTGTTTACTACTGTGCTCCTAAACCTGCTC CTGCCCCATCTGATCATGATCATTATAAGCTCGCCCCGAATTCTGCACCCTCCTCCAACCACTTTGATTACGTAGGTCCCGGTGCAGAGTCTCCGCCGCC CTCTTCCCATGCTCCCTCATCATCATCATCATCATCACATACTCCTGCCATTACTCGTCCTACCGCTGCTGCTGGAGTTGGACTTCACCCCGGTCCTGGT TTCCAACTGCTACTATCACTCGTCATGTTATTATGGCCGTGGGACTAA
AA sequence Show only first row Show all	>Lus10013786 pacid=23169125 polypeptide=Lus10013786 locus=Lus10013786.g ID=Lus10013786.BGIv1.0 annot-version=v1.0 MASSLLQLLLLQCAVAFILSAAGPVSAAHSLSSLLPAPVSVHDIYSNGGSEEDSREDDLDVATEEMRRANYFTFVMLLNMAVNNGQTAANVTFLMPNDRI LSNITFTTENHDKYDNASSSNTATPTWSVREFILHHSIPSPLLFDHLWHFPSGSTIPSSHLGYVLQVQNDDKGHKDGKWWRRRGNFSLNNVKIISPNICT SPSSSIRCHGIDGVLYPAPISPPPVYYCAPKPAPAPSDHDHYKLAPNSAPSSNHFDYVGPGAESPPPSSHAPSSSSSSSHTPAITRPTAAAGVGLHPGPG FQLLLSLVMLLWPWD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	0	1
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10009914 [exp]	1.4	0.8956
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030085 [exp]	1.7	0.8961
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	4.0	0.8548
					Lus10014515 [exp]	4.2	0.8896
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10022982 [exp]	5.7	0.7982
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	5.9	0.8570
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10003506 [exp]	6.9	0.7770
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	6.9	0.8319
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	8.9	0.8665
					Lus10004778 [exp]	10.8	0.8841

Compare expression of checked genes

Lus10013786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.