Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16890 645 / 0 Exostosin family protein (.1) AT2G35100 229 / 3e-69 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT1G67410 221 / 1e-66 Exostosin family protein (.1) AT3G03650 213 / 1e-62 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT1G34270 212 / 2e-62 Exostosin family protein (.1) AT1G74680 211 / 4e-62 Exostosin family protein (.1) AT5G44930 209 / 7e-62 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT3G45400 206 / 3e-60 exostosin family protein (.1) AT5G22940 103 / 2e-23 F8H FRA8 homolog (.1) AT2G28110 97 / 1e-21 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039145 [exp] 907 / 0 AT5G16890 679 / 0.0 Exostosin family protein (.1) Lus10036219 [exp] 232 / 5e-69 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10038355 [exp] 228 / 5e-69 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10037016 [exp] 226 / 4e-68 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10015791 [exp] 226 / 5e-68 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10033734 [exp] 219 / 8e-65 AT1G34270 684 / 0.0 Exostosin family protein (.1) Lus10002060 [exp] 217 / 3e-64 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10031610 [exp] 216 / 5e-64 AT1G34270 685 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 216 / 7e-64 AT3G45400 644 / 0.0 exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049800 [exp] 686 / 0 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.012G124600 [exp] 241 / 1e-73 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 237 / 7e-72 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.002G210000 [exp] 220 / 1e-65 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.008G034500 [exp] 217 / 6e-65 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.013G116200 [exp] 217 / 3e-64 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 214 / 2e-63 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.013G067400 [exp] 205 / 1e-59 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G044600 [exp] 200 / 1e-57 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.009G006500 [exp] 96 / 6e-21 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10013787 pacid=23169088 polypeptide=Lus10013787 locus=Lus10013787.g ID=Lus10013787.BGIv1.0 annot-version=v1.0 ATGGCCACCAAATTCTCCTCCAGATCCAGATCCCCGATCTTCCTATTCTCCATCTTCATAGCCGTCGCCGTATCTCTTCTCCTCCTCACCTTCATCTTCT CATCCTCTCCCCCAACATTGCATCCCTCTCCCCCCGGCCTTTCAACCTCCCCCACCTCTATACGTCCAGAGACCTCCTTCGTCACTTCTCTGCGCAACTT TCTCATCTCCCGCCCTTCCGATGGTGATGTGCTTATTTCCGGAGACCAGCTCGCTCCCAGCTCCACTGTCCTGGATGATGCCGTATTTGACCGGCAGACT GATCGGATGTACCAAGGGGACCCGATTTACCCGCCTGATTTCCCGCTTAGAGTTTACGTCTATCGGATGCCGCCCAAGTTCACTTACGATTTGCTTCGCT TGTTCGATAGCACTTATCATGACACTAGCAACCTCACTTCCAATGGCAGCCCTGTCCATCGACTCATCGAACAGCATTCTGTGGATTATTGGCTCTGGGC GGATTTGATAGCACCTCAGTCAGAAAGGCTTCTGAAGAGCGTCATCAGAGTGGATAGGCAGGAGGATGCGGACTTGTTCTACATCCCTTTCTTCACCACC ATCAGCTTCTTCTTGCTGGATAAGCAGGAATGCAAACCGCTTTATAGGGAAGCTCTAAAATGGGTAACAGATCAACCTGCGTGGAAGAGGTCTCAGGGAC GGGATCACATACTTCCCGTGCATCATCCTTGGTCGTTCAAGTCGGTTCGTAGATACATGAAAAATGCTATCTGGTTGTTACCAGACATGGATTCCACCGG GAACTGGTACAAGCCAGGACAAGTTTACTTGGAGAAAGACTTGATCTTGCCTTATGTGGCCAACCTTGATCTCTGTGATGCAACATGCTTAACGGAATAT GAATCAAAGAGGACAACCTTGTTGTTCTTCCGCGGACGGCTCAAAAGAAATGCTGGTGGGAAGATACGGGCTAAACTTGTATCACAACTAAGCGGAGTTG AAGGTGTGGTGATACAGGAGGGAACGGCTGGCGAGCGAGGGAAAGAACTAGCCCAAAACGGCATGCGAAAGTCCATCTTTTGCTTGAATCCGGCTGGTGA TACTCCATCATCTGCAAGACTCTTTGATGCTATAGTCAGTGGATGCATTCCAGTAATAATTAGTGATGAGTTGGAACTTCCTTTTGAAGGAATTCTTGAT TACAGGAAGATAGCATTATTTGTTTCTTCCAGCGATGCTTCAGAACCAGGATGGCTAATAAAGTTCTTAAGAAGTATCAGTCGTGCTCAGATCAAAGAGT TGCAAGCTAACCTTGCTAAGTACTCGAGGCATTTTGTTTACTCAAGTCCAGCTCAACCATTCGGACCTGAAGACTTGGTCTGGAGAATGATGTTTGCTTA CGTTTTGGATAACCCTAATGGATTTGTGTGTAAGCAGATGGGTGGGAAGATGGTGAATATAAAGCTGCATATTCGAAGGTCTCAGCGGGTAGTGAGGGAG TCGAGAAGCATCTGTACTTGCGACTGTAGACGGCCAGCCAGCAATGTCACTCTTCCAGGTCAGATAACGAAGTCTGCGTAG
AA sequence Show only first row Show all	>Lus10013787 pacid=23169088 polypeptide=Lus10013787 locus=Lus10013787.g ID=Lus10013787.BGIv1.0 annot-version=v1.0 MATKFSSRSRSPIFLFSIFIAVAVSLLLLTFIFSSSPPTLHPSPPGLSTSPTSIRPETSFVTSLRNFLISRPSDGDVLISGDQLAPSSTVLDDAVFDRQT DRMYQGDPIYPPDFPLRVYVYRMPPKFTYDLLRLFDSTYHDTSNLTSNGSPVHRLIEQHSVDYWLWADLIAPQSERLLKSVIRVDRQEDADLFYIPFFTT ISFFLLDKQECKPLYREALKWVTDQPAWKRSQGRDHILPVHHPWSFKSVRRYMKNAIWLLPDMDSTGNWYKPGQVYLEKDLILPYVANLDLCDATCLTEY ESKRTTLLFFRGRLKRNAGGKIRAKLVSQLSGVEGVVIQEGTAGERGKELAQNGMRKSIFCLNPAGDTPSSARLFDAIVSGCIPVIISDELELPFEGILD YRKIALFVSSSDASEPGWLIKFLRSISRAQIKELQANLAKYSRHFVYSSPAQPFGPEDLVWRMMFAYVLDNPNGFVCKQMGGKMVNIKLHIRRSQRVVRE SRSICTCDCRRPASNVTLPGQITKSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16890			Exostosin family protein (.1)		Lus10013787 [exp]	0	1
AT2G34050			unknown protein		Lus10020428 [exp]	1.0	0.7895
AT1G63610			unknown protein		Lus10013233 [exp]	5.9	0.7120
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10012902 [exp]	10.2	0.7135
AT1G43900			Protein phosphatase 2C family ...		Lus10029745 [exp]	10.3	0.7357
AT1G77350			unknown protein		Lus10018864 [exp]	11.6	0.7273
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10015273 [exp]	18.3	0.6952
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	23.1	0.7036
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10037313 [exp]	25.7	0.6880
AT2G34040			Apoptosis inhibitory protein 5...		Lus10025428 [exp]	26.7	0.6939
					Lus10010387 [exp]	27.3	0.6222

Compare expression of checked genes

Lus10013787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.