Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16880 503 / 2e-178 Target of Myb protein 1 (.1.2.3) AT1G06210 232 / 8e-73 ENTH/VHS/GAT family protein (.1.2) AT4G32760 146 / 2e-38 ENTH/VHS/GAT family protein (.1.2) AT1G21380 135 / 3e-35 Target of Myb protein 1 (.1) AT3G08790 135 / 1e-34 ENTH/VHS/GAT family protein (.1) AT1G76970 133 / 1e-34 Target of Myb protein 1 (.1) AT5G01760 128 / 2e-32 ENTH/VHS/GAT family protein (.1) AT2G38410 102 / 3e-23 ENTH/VHS/GAT family protein (.1) AT5G63640 82 / 6e-17 ENTH/VHS/GAT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039144 [exp] 711 / 0 AT5G16880 516 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10040912 [exp] 538 / 0 AT5G16880 539 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10005924 [exp] 536 / 0 AT5G16880 541 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10024896 [exp] 241 / 8e-77 AT1G06210 387 / 3e-134 ENTH/VHS/GAT family protein (.1.2) Lus10022922 [exp] 222 / 9e-69 AT1G06210 369 / 2e-126 ENTH/VHS/GAT family protein (.1.2) Lus10022140 [exp] 149 / 2e-39 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10022753 [exp] 137 / 4e-35 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 135 / 9e-35 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10018948 [exp] 126 / 4e-32 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082500 [exp] 568 / 0 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.019G050000 [exp] 567 / 0 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.002G038000 [exp] 243 / 2e-76 AT1G06210 409 / 7e-142 ENTH/VHS/GAT family protein (.1.2) Potri.005G225000 [exp] 243 / 2e-76 AT1G06210 402 / 6e-139 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 147 / 1e-38 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.002G075500 [exp] 136 / 2e-35 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.005G184900 [exp] 135 / 4e-35 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.016G131900 [exp] 135 / 1e-34 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 134 / 5e-34 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.018G039100 [exp] 134 / 5e-34 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10013788 pacid=23169058 polypeptide=Lus10013788 locus=Lus10013788.g ID=Lus10013788.BGIv1.0 annot-version=v1.0 ATGAGTGACAACTTGATGGAGAAGGTGAGTGCTTTCGGTGAGCGCCTCAAGATCGGAGGAGCGGAAGTCGGCCGAAAGATGAGTGCCGGCATGACCTCTA TGAGCTTCAAGATGAGAGAAATGCTTCAAGGTCCTAACCAAACGGATAAGATAGTCGAGGAAGCTACGGCCGAGTCGCTTGAAGAACCCGATTGGGCTAT GAATCTGGAAATATGCGACAGACTGAATCACGAAAGGATCAACTGTGTCGAATTAGTCCGAGGGATAAAGAAGAGGATGGGTGTGAAGAGTGCTAGAGTT CAGTATTTGGCTTTGGTGTTGCTTGAAACATGTGTGAAGAATTGTGAGAAGGTGTTTGCTGAAGTGGCAGCCGAAAGGGTTCTTGACGACATGGTTATGC TGATTGATGATCCTCAGACTGTTGTTAACAACAGGAATAAGGCTTTGATCCTGATTGAAACCTGGGGTGAATCTACCAGTGAGCTGCGCTATTTGCCTGT TTACGAAGAAACATATAAGAGCTTGATATCAAGGGGCATCCGCTTCCCTGGCCGGGACGATGAGAGCTTGGCACCAATCTTTACTCCACCTCGTTCCATT ACAGCCTCTGAAGGGGATACCAGTCTTGCTCACCAGATTCATCGACAGGTTACTGTTCAAAGTCTTACTACTGAGCAAATGAAAGAAGCTTTTGATGTTG CAAGGAATAGCATTGAACTTCTCACTACCGTTCTATCCTCTTCACCTGGGCAAGATGCCTTGAAGGATGATTTGACTAGTACACTAGTCCAGCAGTGTCG CCAATCTCAGTCCACAATCCAGAGAATCATCGAGACGGAGGGGAATAACGAGGCGATGCTCTTTGAAGCTTTGAATGTTAACGACGAGATTCAGAAGGCT ATGTCCAAGTACGAAAGGATCGAGAAGCCACTGCCCGTGGTACCTTCTGAACCAGTACCTGTGGAAGCTAGTGGTCACTCGACCGTTCATGTAAAAGAAG AAGAAGATGCATTGATCAGAAAGCCGGCAGGTCTGCAAGCTGGAACGTCACATGGAGAAGGAAGCAACGAGGATATGATGGACGATCTTGATGAGATGAT CTTCGGGAAGAAAGGTGGGGGCGACACATCGGCTATCAATAAGGAGAAGCAAGAGCCGTCGTCATCCAAGGACGATCTCATCAGTTTATGA
AA sequence Show only first row Show all	>Lus10013788 pacid=23169058 polypeptide=Lus10013788 locus=Lus10013788.g ID=Lus10013788.BGIv1.0 annot-version=v1.0 MSDNLMEKVSAFGERLKIGGAEVGRKMSAGMTSMSFKMREMLQGPNQTDKIVEEATAESLEEPDWAMNLEICDRLNHERINCVELVRGIKKRMGVKSARV QYLALVLLETCVKNCEKVFAEVAAERVLDDMVMLIDDPQTVVNNRNKALILIETWGESTSELRYLPVYEETYKSLISRGIRFPGRDDESLAPIFTPPRSI TASEGDTSLAHQIHRQVTVQSLTTEQMKEAFDVARNSIELLTTVLSSSPGQDALKDDLTSTLVQQCRQSQSTIQRIIETEGNNEAMLFEALNVNDEIQKA MSKYERIEKPLPVVPSEPVPVEASGHSTVHVKEEEDALIRKPAGLQAGTSHGEGSNEDMMDDLDEMIFGKKGGGDTSAINKEKQEPSSSKDDLISL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	0	1
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	1.0	0.9752
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	1.4	0.9617
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	2.4	0.9570
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10032773 [exp]	3.2	0.9598
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	4.0	0.9599
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	4.2	0.9615
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10023860 [exp]	4.6	0.9505
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	4.9	0.9454
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	5.0	0.9339
AT3G12870			unknown protein		Lus10031198 [exp]	5.7	0.9477

Compare expression of checked genes

Lus10013788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.