Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64260 201 / 7e-63 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT4G08950 195 / 1e-60 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT1G35140 189 / 3e-58 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT5G09440 186 / 2e-57 EXL4 EXORDIUM like 4 (.1) AT3G02970 186 / 7e-57 EXL6 EXORDIUM like 6 (.1) AT2G17230 125 / 2e-33 EXL5 EXORDIUM like 5 (.1) AT5G51550 115 / 6e-30 EXL3 EXORDIUM like 3 (.1) AT2G35150 108 / 2e-27 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039143 [exp] 536 / 0 AT5G64260 202 / 1e-63 EXORDIUM like 2 (.1) Lus10021370 [exp] 187 / 3e-57 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 181 / 8e-55 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10017050 [exp] 178 / 7e-54 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10036484 [exp] 157 / 4e-46 AT5G64260 301 / 2e-102 EXORDIUM like 2 (.1) Lus10018314 [exp] 114 / 3e-29 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10013834 [exp] 113 / 8e-29 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10031130 [exp] 112 / 1e-28 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10026548 [exp] 112 / 2e-28 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G080100 [exp] 315 / 2e-107 AT3G02970 213 / 7e-67 EXORDIUM like 6 (.1) Potri.005G163000 [exp] 213 / 2e-67 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.017G051700 [exp] 211 / 7e-67 AT5G64260 439 / 2e-156 EXORDIUM like 2 (.1) Potri.005G163700 [exp] 209 / 1e-65 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163500 [exp] 207 / 4e-65 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163600 [exp] 206 / 6e-65 AT4G08950 438 / 1e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.001G311700 [exp] 206 / 7e-65 AT5G64260 444 / 2e-158 EXORDIUM like 2 (.1) Potri.005G163300 [exp] 203 / 1e-63 AT4G08950 436 / 8e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.002G098800 [exp] 200 / 2e-62 AT4G08950 430 / 1e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.002G098600 [exp] 191 / 5e-59 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [flax] [poplar] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Lus10013789 pacid=23169132 polypeptide=Lus10013789 locus=Lus10013789.g ID=Lus10013789.BGIv1.0 annot-version=v1.0 ATGGCGCTTCAATCACTTATCTTCTTCTTCTTCTTCTCATTCTCCCTCCTCTTACTCTTCTCCCGGCCATGTACCGCCGCCGGAGGCAGCAAAGAGCCCG CCGAGCTAACCTACCACGGAGGCCCGATCCTCACCGGAGAGCTGAAGCTAGCGCTGGTGTGGTATGGTCAGTGCGGGCGCATCCAGAAGAACGCGATTAG GTCGTTCGTGAAGTCGCTCAACTTCGAAGGGAAGAAGAAGGAGGCACCGAGGGTGTCGGAGTGGTGGAAGAGGGTGGAATTGTACCAGACGGCGGCGAAG CTGCCGCATAAGCCGATCAAAGTGAGCGTGGTGAGGCAGGTGACCGACACGAGTTACTCTATCGGGAAAGTAATCACGGTAGATTTCGTGAAGCCTCTTC TCCATAAGGCTAGCGAAGGAGACACCAGCATCTTGCCGGTGATTCTCACGGCGAGGGATGTTTCTGTTCAGGGACTCTGCACAGGGAAGTGCTCCAAGCA CGGCGCCATTGAGAAGCAGCCGTATCTCATAGTAGGGAACCCGGAGACGGAGTGCCCCGAAGCATGCGCGTGGCCGTTCCGAGGACCCCCGGCCTTGGTC CCACCGTCCGGCGACATCGGAGCAGACGCCATGGTCATCGCATTCGCTCAAGGATTGGCCGACACGGTCACCAACCCGATGGAGACCGGTTTTTTCCAAG AAGTACGGAGAAAGACCTTGGAAGCGTCGTCGGCTTGCTCCGGGATATTCGGAAGTGGGGCGACGGCCGGAAGCAACCCAGGTAAGGTGCTCAAGGATCC GAAGGGCGGGAACAGCTTTAATTCGTACGGTTGCAGCGACAGTAAGCAGTTCTTGCTCCCTGCTCTCTGGGATCCTGCAACCAAATCTTGCTGGACCTTG ATGTAA
AA sequence Show only first row Show all	>Lus10013789 pacid=23169132 polypeptide=Lus10013789 locus=Lus10013789.g ID=Lus10013789.BGIv1.0 annot-version=v1.0 MALQSLIFFFFFSFSLLLLFSRPCTAAGGSKEPAELTYHGGPILTGELKLALVWYGQCGRIQKNAIRSFVKSLNFEGKKKEAPRVSEWWKRVELYQTAAK LPHKPIKVSVVRQVTDTSYSIGKVITVDFVKPLLHKASEGDTSILPVILTARDVSVQGLCTGKCSKHGAIEKQPYLIVGNPETECPEACAWPFRGPPALV PPSGDIGADAMVIAFAQGLADTVTNPMETGFFQEVRRKTLEASSACSGIFGSGATAGSNPGKVLKDPKGGNSFNSYGCSDSKQFLLPALWDPATKSCWTL M

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10013789 [exp]	0	1
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030210 [exp]	1.4	0.8931
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	4.9	0.8615
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10033034 [exp]	7.5	0.8935
AT1G66330			senescence-associated family p...		Lus10004049 [exp]	9.9	0.8658
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	12.8	0.8616
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	13.0	0.8776
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10027871 [exp]	13.0	0.8738
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10016820 [exp]	13.1	0.8913
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10002692 [exp]	22.7	0.7997
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Lus10023320 [exp]	22.8	0.8750

Compare expression of checked genes

Lus10013789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.