Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03795 597 / 0 Exostosin family protein (.1) AT3G07620 456 / 1e-156 Exostosin family protein (.1) AT5G25310 426 / 9e-145 Exostosin family protein (.1) AT5G11130 422 / 3e-143 Exostosin family protein (.1) AT5G20260 393 / 7e-132 Exostosin family protein (.1) AT5G33290 390 / 2e-130 XGD1 xylogalacturonan deficient 1 (.1) AT3G42180 388 / 9e-130 Exostosin family protein (.1.3) AT4G16745 348 / 3e-113 Exostosin family protein (.1.2) AT5G11610 347 / 7e-113 Exostosin family protein (.1.2) AT4G32790 333 / 4e-107 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039142 [exp] 981 / 0 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 511 / 6e-178 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10016058 [exp] 468 / 5e-163 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10008751 [exp] 470 / 5e-161 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 456 / 7e-156 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10027707 [exp] 411 / 8e-139 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10005186 [exp] 388 / 9e-130 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 372 / 6e-122 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10001958 [exp] 361 / 7e-122 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118000 [exp] 673 / 0 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G171100 [exp] 529 / 0 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.014G170900 [exp] 514 / 2e-179 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 440 / 6e-150 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 434 / 2e-147 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 425 / 2e-144 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 424 / 5e-144 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 422 / 1e-142 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 420 / 2e-142 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 419 / 5e-142 AT3G42180 524 / 0.0 Exostosin family protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10013790 pacid=23169140 polypeptide=Lus10013790 locus=Lus10013790.g ID=Lus10013790.BGIv1.0 annot-version=v1.0 ATGCAGAGTCAAGCTGCTATAGTTTGCTCTCTTGATTCAAAAAGGGAGATGAGAAACAACAAGGTGAAGAAGCTGTGTGTCTCTGCATGTAGGATGTGTT CAAGTTCATCCAACTCACTCAAACTCCTGTGGGTTTTCGTCCCCTTGATTCTGGTTTACGGGTTGGTTTCCAATTTCGGCCCGACTCTTTCCGGTTTGGA GGTTTTGACGACTAATAATGGAACCAGTAAGGCAGGGATGGTGATGGTGGGTGGTGGCAGAGTAGAGAGTGTGGAAGAGAAGAAGATGGCTATTATCTCT GCTGATGAGCTGTCACTTGTCAATCGTTCTTCTTCCCCTCCGGTCTCCGTTCACCAGCAGGAGGAACAGCCTCAGCCGCCTGTTATTAATAATCAGGATG AAGGGTCAGATCTTGACTTGTTACCAACAAGTAAAAACCAGTCCTCTGCCTCTAATCCAGTACCCAACTCTGCTTCAGTCCCAATCAACGGAACCCAAGA TCTAGCCTTGGAGAAGAAAGAGATCAAGAAAGAGATCACAAGCTTAGACAAAGTGGAAGCCGGTTTACAAAAGGCTCGTCTCGCAATCAAACAATCGCAG AGTGGAAACCAAACCCTCGACGATCCCCAGTATGTCCCCACCGGACCAATGTACTGGAACGCCAGAGCATTCCACGCTAGCTACAGAGAAATGGAGAAAC AGTTCAAGGTGTTTGTGTACGAGGAAGGTGAGCCTCCCGTGTTCCACAATGGCCCCTGCAAGAGTATCTATGCCATGGAAGGGAACTTCATCCACGGAAT GGAGATCGACCCCAAGTTCCGGACCAAAGACCCCGACAAGGCGCACATGTTCTTCCTTCCATTCAGTGTGGCGATGTTGGTTCAGTTTGTGTATGTTCGA GACTCGCACGACTTCGGTCCGATTAGAAGGACTGTTGCGGATTATGTCGAGCTGGTTGCTAAGAAGTATCCGTACTGGAATCGGAGCCTCGGGGCAGATC ATTTCATGCTCGCTTGCCATGATTGGGGGCCAGAAGCTTCATTCTCTGTACCATTCCTCGGGAAGAACTCGATCCGCGCACTTTGCAATGCCAACACCTC TGAGCGGGTCAATCCGGTCAAGGACGTGTCATTCCCCGAGATCAATCTCCGAACAGGCACAACCACCGGATTCATCGGAGGACCATCACCATCGAAACGA TCCATCCTGGCATTCTTTGCGGGAGGACTTCACGGTCCGATAAGGCCGATCCTGCTTCAGCATTGGGAGAAGAAGAACGACGAGGATGTTCGTGTACATC AGTACCTCCCCAAAGGAATATCGTATTACGACATGATGAGGAAGAGCAAGTTCTGCCTATGTCCCAGCGGGTACGAAGTTGCCAGCCCGAGAGTCGTGGA GGCGATCTATGCTGGCTGCGTTCCGGTCCTCATATCCGACCACTACGTGCCGCCATTTAGCGACGTGCTGAACTGGAAAGCATTCTCCGTCGAGGTATCG GTGAGCGAGATCCCGAATTTGAAGACCATTCTGGAAGGAATATCGACGAGGCAGTACATTAGGATGCAGAGGAGAGTTTTGCAAGTGAGGAGGCATTTCG AGGTCAACTCGCCTGCTCGACGGTACGATGTGTTCCATATGATATTGCATTCTATTTGGCTGAGGAGGTTGAATGTGAGGATTCAGGGTGATCAATTGGC CGCCATCACCAGCTGA
AA sequence Show only first row Show all	>Lus10013790 pacid=23169140 polypeptide=Lus10013790 locus=Lus10013790.g ID=Lus10013790.BGIv1.0 annot-version=v1.0 MQSQAAIVCSLDSKREMRNNKVKKLCVSACRMCSSSSNSLKLLWVFVPLILVYGLVSNFGPTLSGLEVLTTNNGTSKAGMVMVGGGRVESVEEKKMAIIS ADELSLVNRSSSPPVSVHQQEEQPQPPVINNQDEGSDLDLLPTSKNQSSASNPVPNSASVPINGTQDLALEKKEIKKEITSLDKVEAGLQKARLAIKQSQ SGNQTLDDPQYVPTGPMYWNARAFHASYREMEKQFKVFVYEEGEPPVFHNGPCKSIYAMEGNFIHGMEIDPKFRTKDPDKAHMFFLPFSVAMLVQFVYVR DSHDFGPIRRTVADYVELVAKKYPYWNRSLGADHFMLACHDWGPEASFSVPFLGKNSIRALCNANTSERVNPVKDVSFPEINLRTGTTTGFIGGPSPSKR SILAFFAGGLHGPIRPILLQHWEKKNDEDVRVHQYLPKGISYYDMMRKSKFCLCPSGYEVASPRVVEAIYAGCVPVLISDHYVPPFSDVLNWKAFSVEVS VSEIPNLKTILEGISTRQYIRMQRRVLQVRRHFEVNSPARRYDVFHMILHSIWLRRLNVRIQGDQLAAITS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03795			Exostosin family protein (.1)		Lus10013790 [exp]	0	1
AT1G34630			unknown protein		Lus10043395 [exp]	1.0	0.8721
AT5G13825			unknown protein		Lus10001690 [exp]	6.6	0.8675
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031589 [exp]	8.7	0.7293
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	10.4	0.7551
AT1G76140			Prolyl oligopeptidase family p...		Lus10019994 [exp]	11.1	0.8073
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007965 [exp]	15.0	0.7977
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	18.5	0.6967
AT1G73750			Uncharacterised conserved prot...		Lus10007966 [exp]	20.7	0.7613
					Lus10006661 [exp]	26.2	0.7520
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10007234 [exp]	26.7	0.7534

Compare expression of checked genes

Lus10013790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.