Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45790 110 / 2e-28 Protein kinase superfamily protein (.1) AT3G45670 109 / 4e-28 Protein kinase superfamily protein (.1) AT3G46140 109 / 6e-28 Protein kinase superfamily protein (.1) AT5G27510 106 / 2e-27 Protein kinase superfamily protein (.1) AT5G27790 98 / 4e-24 Protein kinase superfamily protein (.1) AT2G41920 97 / 8e-24 Protein kinase superfamily protein (.1) AT2G05060 96 / 2e-23 Protein kinase superfamily protein (.1) AT2G34290 95 / 2e-23 Protein kinase superfamily protein (.1) AT4G36950 95 / 6e-23 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G50310 95 / 6e-23 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034242 [exp] 153 / 3e-45 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 145 / 4e-42 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034288 [exp] 144 / 1e-41 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10026894 [exp] 139 / 2e-40 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10017114 [exp] 139 / 6e-40 AT3G50310 127 / 3e-34 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029023 [exp] 121 / 5e-34 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034216 [exp] 115 / 5e-32 AT5G27510 107 / 2e-28 Protein kinase superfamily protein (.1) Lus10012668 [exp] 107 / 2e-27 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10019340 [exp] 98 / 7e-24 AT5G67080 306 / 6e-103 mitogen-activated protein kinase kinase kinase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131100 [exp] 122 / 2e-33 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.007G044800 [exp] 117 / 3e-31 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 117 / 3e-31 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 116 / 6e-31 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.003G184200 [exp] 117 / 9e-31 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.001G042400 [exp] 117 / 1e-30 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.004G171500 [exp] 96 / 3e-23 AT3G50310 202 / 7e-63 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.006G181000 [exp] 95 / 7e-23 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.009G073200 [exp] 86 / 4e-19 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.014G155000 [exp] 85 / 4e-19 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013791 pacid=23169151 polypeptide=Lus10013791 locus=Lus10013791.g ID=Lus10013791.BGIv1.0 annot-version=v1.0 ATGGAGTGGACACGAGGAAGACTTCTGGGAAAGGGCAGCTCCGGCGAAGTGTTCTTAGCCATCCCCGGAAAACCCTATTCATCCAGAATCGTCCAGTGCT TCGGCACCACCACCACAACCAAATTCAATCTGTTACTCGAGTTGGCCAACGGCGGCTCCCTCTCCAATTTGATCAAAGGAGGACTCCGGGAGGTGTACGT GAAGGACTGCACCCGTTCCCTCCTCAAATCGCTAGCTGTGATCCATTCGAAAGGAATAGTCCACTGCGATATCAAACCCGCCAACATCCTAGCCTTCCGC CACCGATACGACCCGGAGCTCTACAGTTTGAAGATCGCTGACTTTGGGCTCGCGGTGGAGTGGCGCATGCTGCATCCGAGGAGCAAGAATTACAGGGGGA CGCTGAGGTATATGCCGCCTGAAGTTGTTATTTTGGGGATTGTTTCCCCGGCGATGGACGTTTGCGCTTTGGGATGTACTGTGATTGAGATGCTGACTGG ACTGGGAAGGCTCCATGGAGTAGCTGTAATGGCAGCAGCCATGTGTCGGCGGAAATCAGAAAGGGTGGGCATCCGGCGATTCCGGAGTGGATATCGGAAG AAGGGAAGAATTTCTTGGAGACGTGTTTCTCCGGTTGTTCGTACAAGCGGCTCCCTGCCGAGTGGCTTCTATTGCATCCTTTTGTAA
AA sequence Show only first row Show all	>Lus10013791 pacid=23169151 polypeptide=Lus10013791 locus=Lus10013791.g ID=Lus10013791.BGIv1.0 annot-version=v1.0 MEWTRGRLLGKGSSGEVFLAIPGKPYSSRIVQCFGTTTTTKFNLLLELANGGSLSNLIKGGLREVYVKDCTRSLLKSLAVIHSKGIVHCDIKPANILAFR HRYDPELYSLKIADFGLAVEWRMLHPRSKNYRGTLRYMPPEVVILGIVSPAMDVCALGCTVIEMLTGLGRLHGVAVMAAAMCRRKSERVGIRRFRSGYRK KGRISWRRVSPVVRTSGSLPSGFYCILL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45790			Protein kinase superfamily pro...		Lus10013791 [exp]	0	1
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Lus10013084 [exp]	1.0	0.9206
AT5G08350			GRAM domain-containing protein...		Lus10017372 [exp]	4.5	0.8793
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	4.7	0.9068
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10022316 [exp]	4.9	0.8724
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	6.2	0.8961
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10026722 [exp]	6.5	0.8727
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	10.2	0.8780
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	10.5	0.8689
AT5G05180			unknown protein		Lus10034251 [exp]	12.5	0.8743
					Lus10005747 [exp]	12.8	0.8553

Compare expression of checked genes

Lus10013791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.