Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02090 998 / 0 CHA19, ETL1, CHR19 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT3G06010 266 / 4e-76 ATCHR12 Homeotic gene regulator (.1) AT2G13370 266 / 4e-75 CHR5 chromatin remodeling 5 (.1) AT5G19310 260 / 4e-74 Homeotic gene regulator (.1) AT3G06400 248 / 9e-70 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT4G31900 244 / 5e-68 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT5G44800 242 / 4e-67 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT2G28290 238 / 7e-66 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G25170 236 / 2e-65 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G18760 204 / 1e-54 CHR8 chromatin remodeling 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039140 [exp] 1310 / 0 AT2G02090 1107 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10009711 [exp] 268 / 1e-75 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10022423 [exp] 267 / 1e-75 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10010522 [exp] 261 / 3e-74 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10034064 [exp] 261 / 3e-74 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10041735 [exp] 256 / 5e-74 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10024019 [exp] 249 / 4e-71 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10038363 [exp] 248 / 4e-69 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10005339 [exp] 244 / 5e-68 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099000 [exp] 1012 / 0 AT2G02090 1061 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.001G253400 [exp] 264 / 2e-74 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.008G149900 [exp] 261 / 2e-74 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 259 / 2e-73 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G205600 [exp] 255 / 3e-72 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G021400 [exp] 255 / 3e-72 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.019G129900 [exp] 250 / 3e-72 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.001G123400 [exp] 254 / 4e-71 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.007G026700 [exp] 246 / 1e-70 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.003G110100 [exp] 249 / 1e-69 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013792 pacid=23169141 polypeptide=Lus10013792 locus=Lus10013792.g ID=Lus10013792.BGIv1.0 annot-version=v1.0 ATGAAGCGTGATTTTGATGAAATCTCCGACGACGAATGGGATAATCACGCCTTCAATCCCTCTCGCATCCTCAAAACAGCTCCCTCTTTCTCCTCCAAAC CCCCATCCGACGACATCCACCACCGCCACCCACCTCCGCCAATAGAGTCATTCTCTTTCCGCACCAAATCCTCCTCCAATGGACCGCTGTTTGTTCCCGA TAGTCCCAACAACAGTAACAGTAGCGACGACTGTGTCATAGTTACCACCGGAGCTAAGGCTTCTTCGCAGCCTGTGGAGTTGGAGGATGACGACTTCGAC GATCGTAACAACAGACCCGCTAGAAATCGGGGTCGTCGGTTTATCATTGATGATGATGACGATGAGGAGGAGGGACAAGCTGCTGCGGCAGAGATAGGTC GTGACGAGAATCGAGATATTATGGAGGTTTATGAAGTCAAGTCTTCTAGTGACGGTGAGGACTTGGAACTTGAGCTCGAGGATGATGACGTGGTTGGGAA AGCTCTGCAGAAATGTGCCAAAATATCTGCCGAGCTTAGGAAAGACCTGTATGGATCTACAGGAGCGTCGTGTGATCGTTATGCAGAGGTCGAAGCTTCT GCGGTCAGGATTGTGACGCAGACAGACATTGATGCCGCTTGTATGGTGGAGGTTCCAGATTTCCAGCCTGTTCTCAAACCATATCAACTGGTTGGCGTGA ACTTTCTTCTTCTTTTGTATAGAAAAAATATTGGCGGAGCAATATTGGCTGATGAGATGGGTCTTGGGAAGACTATTCAGGCTATAACATATTTGATGTT GCTGAAGCATTTAAATGATGATCCTGGTCCACATTTAATTGTGTGCCCCGCTTCTCTTCTGGAAAACTGGGAAAGAGAACTTAAAAAGTGGTGTCCATCA TTCTCTGTACTTCAGTATCATGGGGCTACAAGATCCGCCTACTCGAAAGAATTGAGCCACCTTGCCAAAAAGGGTCTTCCGCCACCATTTAATGTGCTTC TTGTGTGCTACTCTCTTTTTGAAAGACACAGTGTGCAGCAGAAAGATGACCGTAAACTTCTTAAACGTTGGCGCTGGAGCTGTGTTCTTATGGATGAGGC GCATTCTCTTAAAGATAAGAACAGCTATAGACATTGGTTGGAGCTATGGTCCTTGTTGGAGTTTATGTTGCCTGATCTCTTCGCTACTGGGGATGTTGAT TTAAAAAAGCTATTGAATGCAGAAGATGGAGATTTAATTGGCCGCATGAAGTCCATCTTAGGGCCATTCATTTTGAGGAGGTTAAAGTCAGATGTAATGC AGCAACTTGTGCCTAAGATACAGAGGGTTGAATATGTTTCAATGGAGAAACAGCAGGAAAATGCTTACAAAGAAGCAATAGAAGAATATCGTACATACTC ACAGGCCCGAATTGCAGAATGTTCCAATGTTGACTTGACAACTGTAATTAAGGCTCTTCCTAGACGGCAGATATCAAATTACTTTGTTCAGTTCAGAAAG ATTGCGAATCATCCATTATTGGTGAGAAGAATTTACACAAATGAGGACGTTGCACGTTTAGCTAAGAATTTACATCCAAAGGGTGTTTTTGGCCTTGAAT GTACCTTGGATAGAGTAGTTGATGAAATTAAGAGCTACAATGATTATACTATTCATCAGATGCTACGATCTTATAGTGTTAGTGATTCAAAGGGAATCCT TTCAGACAAGCATGTCATGCTTTCTGCAAAATGTCGAGTATTGTCTCAGCTTCTTCCTTCACTTCACGAAGGCGGGCATCGAGTTCTAATCTTTAGTCAG TGGACGTCAATGTTAGACATCTTAGAGTGGACCTTGGATGTAATTGGGGTGACCTATAGAAGACTTGATGGAAGTACACAGGTGACGGATAGACAGACAA TAGTGGACAATTTCAACAACGACAAGTCCATCTTCGCGTGCTTGCTTTCTACCAGAGCTGGAGGGCAAGGTTTGAACCTGACCGGAGCAGATACAGTTAT CATACACGACATGGATTTCAACCCACAGATCGATAGGCAGGCAGAGGATCGATGCCATCGGATAGGCCAGACAAAGCCAGTAACCATATACAGGCTTGTA ACAAAGGGCACAGTGGATGAGAACATATACGAGATTGCGAAAAGGAAACTGACTTTAGACGCTGCAGTTCTGGAGACGGGTGTGGACGTAGATAACCAAG GGGACACGTCCGAGATGACTATGGGGGAGATATTATCGTCGCTTCTAATGTCGTAA
AA sequence Show only first row Show all	>Lus10013792 pacid=23169141 polypeptide=Lus10013792 locus=Lus10013792.g ID=Lus10013792.BGIv1.0 annot-version=v1.0 MKRDFDEISDDEWDNHAFNPSRILKTAPSFSSKPPSDDIHHRHPPPPIESFSFRTKSSSNGPLFVPDSPNNSNSSDDCVIVTTGAKASSQPVELEDDDFD DRNNRPARNRGRRFIIDDDDDEEEGQAAAAEIGRDENRDIMEVYEVKSSSDGEDLELELEDDDVVGKALQKCAKISAELRKDLYGSTGASCDRYAEVEAS AVRIVTQTDIDAACMVEVPDFQPVLKPYQLVGVNFLLLLYRKNIGGAILADEMGLGKTIQAITYLMLLKHLNDDPGPHLIVCPASLLENWERELKKWCPS FSVLQYHGATRSAYSKELSHLAKKGLPPPFNVLLVCYSLFERHSVQQKDDRKLLKRWRWSCVLMDEAHSLKDKNSYRHWLELWSLLEFMLPDLFATGDVD LKKLLNAEDGDLIGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVSMEKQQENAYKEAIEEYRTYSQARIAECSNVDLTTVIKALPRRQISNYFVQFRK IANHPLLVRRIYTNEDVARLAKNLHPKGVFGLECTLDRVVDEIKSYNDYTIHQMLRSYSVSDSKGILSDKHVMLSAKCRVLSQLLPSLHEGGHRVLIFSQ WTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDNFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLV TKGTVDENIYEIAKRKLTLDAAVLETGVDVDNQGDTSEMTMGEILSSLLMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02090		CHA19, ETL1, CH...	CHROMATIN REMODELING 19, SNF2 ...		Lus10013792 [exp]	0	1
AT4G10050			esterase/lipase/thioesterase f...		Lus10041054 [exp]	7.3	0.8574
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	9.1	0.8494
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	15.3	0.8340
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	19.3	0.8346
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	23.6	0.8318
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10029774 [exp]	24.2	0.8096
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	27.2	0.8232
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	28.7	0.8470
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Lus10038957 [exp]	29.2	0.8208
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	35.9	0.8252

Compare expression of checked genes

Lus10013792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.