Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01990 117 / 2e-31 unknown protein AT1G14630 115 / 1e-30 unknown protein AT5G48720 72 / 2e-14 XRI1, XRI x-ray induced transcript 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039139 [exp] 411 / 2e-144 AT1G14630 120 / 3e-32 unknown protein Lus10038181 [exp] 64 / 2e-11 AT5G48720 253 / 4e-83 x-ray induced transcript 1 (.1.2) Lus10025920 [exp] 62 / 8e-11 AT5G48720 237 / 2e-77 x-ray induced transcript 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140900 [exp] 131 / 2e-35 AT2G01990 148 / 3e-43 unknown protein Potri.010G100700 [exp] 129 / 2e-35 AT1G14630 166 / 1e-50 unknown protein Potri.014G190000 [exp] 71 / 7e-14 AT5G48720 226 / 2e-73 x-ray induced transcript 1 (.1.2) Potri.002G244000 [exp] 70 / 2e-13 AT5G48720 281 / 2e-94 x-ray induced transcript 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013793 pacid=23169135 polypeptide=Lus10013793 locus=Lus10013793.g ID=Lus10013793.BGIv1.0 annot-version=v1.0 ATGGGTGAGGTTGTTCCCTGGGAGTGGGAGTCAGTACTGTTCGGTTCTTCTTCTAATACTGCAGCCAGCTGTTTCGATCTTCCCAACAACAACCTCATCG GGTTTCGCAATTCATCAGACTTGTCGTCTCTGCCGCAGCAGCACTACTCGATGGAGGAGGATGGCGGCAATTACTCCACGTCATATCTGGATCGGCTGCA ATTCCCAACTGGGTATTTGGAAGATGCTCTGCTCGAGCTCTCCCACCCAGCTGCTGTCTCCAAGCGGCGGCGCAACGAGAATTCGGCGCAGAATTTCCAT GCTGTAGCTACCGCCGCCGCTGCAACGGCGTCGTATGGCGGTTGTGGTGGACTATTGTTTTCTAGTCAACGGAAGGAAATGACGATCTCGTCCCCGATTG AAATTCTTGACTACTATAATATTCCGTCGTCTTCTTCTTCCCATTTATATAACATATCGGTATCGCCCATTTCTTCTGATGACTACAACAAAGCGGGCTC CGTCGGCGATGACGAAGTCAGAGATCACTCCGGCAGCTGCAGCAATTCAGCGCTGACGATCAGCAGCGATCAACGTCCGCATCATCCTTCCTCATGGCTG AAGATGGAGATAGATGTAAAAAAGGAGGATGTCGACGACGATGAAAAGAAGGAAAAGAATCAGAGAGCAATAACTACGAAGGAAACATGCGGCGTCGGAG GAGAAGAACGGTGGAAAAGGAGGAGGAAGAGGGAGGATCGGGTGGCGTATCCGTTTGCGTTGGTGAAGCCAGGAGGGGGAGAGGGAGAGGTGACGATAGA GGATATAAACAAGAGAATACTAATGGCGCCAACGAGGCCGGTGAGACATCCGGTGGGGAAGTATGCTTGTAGGCCATGTGTGATGTCCACATCGACGGCG GCGGTTGCCGGACTATCAGGGAAAGCGGTGGTTGCGCTGACCAGGATCTATACCCAAGGTGGCAAAGGGACTGTCACTATTATTAGGACCAAGGGTTGA
AA sequence Show only first row Show all	>Lus10013793 pacid=23169135 polypeptide=Lus10013793 locus=Lus10013793.g ID=Lus10013793.BGIv1.0 annot-version=v1.0 MGEVVPWEWESVLFGSSSNTAASCFDLPNNNLIGFRNSSDLSSLPQQHYSMEEDGGNYSTSYLDRLQFPTGYLEDALLELSHPAAVSKRRRNENSAQNFH AVATAAAATASYGGCGGLLFSSQRKEMTISSPIEILDYYNIPSSSSSHLYNISVSPISSDDYNKAGSVGDDEVRDHSGSCSNSALTISSDQRPHHPSSWL KMEIDVKKEDVDDDEKKEKNQRAITTKETCGVGGEERWKRRRKREDRVAYPFALVKPGGGEGEVTIEDINKRILMAPTRPVRHPVGKYACRPCVMSTSTA AVAGLSGKAVVALTRIYTQGGKGTVTIIRTKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01990			unknown protein		Lus10013793 [exp]	0	1
AT1G55265			Protein of unknown function, D...		Lus10013756 [exp]	3.0	0.8397
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Lus10027701 [exp]	10.0	0.8316
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	11.4	0.8182
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10018207 [exp]	12.6	0.7964
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	15.3	0.7900
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	25.1	0.7789
AT1G28280			VQ motif-containing protein (....		Lus10015315 [exp]	34.3	0.7219
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	34.5	0.7869
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	34.9	0.7749
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10020389 [exp]	36.6	0.7781

Compare expression of checked genes

Lus10013793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.