Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 295 / 7e-89 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 260 / 2e-76 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 240 / 2e-68 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT3G17630 186 / 2e-49 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT5G41610 184 / 4e-49 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT1G06970 182 / 3e-48 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT3G53720 165 / 2e-42 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G30240 163 / 7e-42 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT5G22900 157 / 9e-40 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT2G28180 154 / 1e-38 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039138 [exp] 810 / 0 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 277 / 1e-81 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 277 / 2e-81 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10028748 [exp] 210 / 8e-61 AT5G41610 517 / 1e-178 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10017540 [exp] 215 / 2e-59 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10015268 [exp] 213 / 1e-58 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 206 / 4e-56 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017541 [exp] 201 / 5e-54 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10040881 [exp] 200 / 5e-54 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G111400 [exp] 294 / 7e-88 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.007G105200 [exp] 280 / 3e-83 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G189100 [exp] 278 / 2e-82 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G102700 [exp] 265 / 1e-77 AT2G13620 525 / 3e-175 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 246 / 2e-70 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 187 / 4e-50 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 187 / 5e-50 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 187 / 8e-50 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G183000 [exp] 181 / 9e-48 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G005200 [exp] 179 / 4e-47 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013794 pacid=23169078 polypeptide=Lus10013794 locus=Lus10013794.g ID=Lus10013794.BGIv1.0 annot-version=v1.0 ATGGCGAATATTACATGGAAAGATGATCACAATAACATAACGTTGAGGGAAAATGGAGGGGTTATCCTCGAAGGAATGTCTAGCGGAGTGGTTAACCTAT GTCACATGGAAGCCGTCCCAACAAACCTCAACAATTCAGTTTTTTGGAAACTCGCAAGACCTAAAAACGAACACGACCCCTCCTTCGTCTATTATGTCCT GTATTACTTCATCCAATTAACCCTCATCCTCTTTGCCATTCACCTCTTCGCTCTCATCCTTAAGCCCTTACGCCTCCCTCGCTTTTCCGTCGAACTCTTC GCAGGGGTAATGGTGGGTCCCAGCGTATTGGGATTACGGAACTGGTATTCAATCTACATACTTCCTCCAAGCAGTCTGAAGGGCTTCAACCAGCCCATGT TCGCCATACTGATACTCTCCATACTAGTAATTTCAGTAACGGTAATCCCATTAGCCAAAGCAGCAAACAAATCCAACAGGAGAACCAGCCAGTTCAAGCA TCGAACGGTCGAAAGCAACAAGCTGGAATCCGAGCTCAGGATCCTAACATGCATCCACTCGCCGCGCAACCTCTCAGGAATGATCAACCTCCTGGAATCT TCCAACGCAAGCAAGCAGTACCCGATCTGCGTCTTCGCCCTCCACCTAGTCCAGCTCACCGAGCGACGCGCCACCGCTATGCTCATCGTCCACGACAGCT CCTCCATCTCCAACCGCAGCATGTTCGACGGCAGCTCGGGGCAGAATCTGAGCCGCCGCAAGGAAGACTCGAAACACATCATCACGGCCTTTGAGAGCCT CGAGACTCGCGGCCCATCGGTCTCGGCCCAGTCGCTCACGGTCGTGTCGCCTTACACGACCATGCACGAGGACGTCAGCTGTTTGGGGGAGGACAAGCGC GTGACGTTGATCCTCGTCCCGTTCCATAAACAGGCTGACGTGTACGGGAGGTTGCAGGATGAGAATCTGAACTGGAGGACGGTCAATAAAAACCTCCTTG CAACGGCTACCTGTTCAGTCGGTATACTCATTGACCGCGGGCTCGGATCCAATAAGGACAGATCCACAGTACAGTCCGTGCAGCAGCAGCAATCTCAGCC GTTAGCGTCGTCAACTTATGCTGTTATATTCATTGGTGGGCCCGATGACCGAGAGGCGCTGGCATTCGGATGGAGGATGTCGAAGTCTCCTAGTGTAAAC TTCACGGTCCTCCGTCTCATTTCTGACCACGAAGATGATCGGGAAGATGAGGACAGTGATCAGGCCGAAGAAGTAGCGTCGATAAAAGGATCGGAACAAG GAGGAGGGGCGAATTCAACAACCACGACGCCGATGAGGAGTAAAAAGGAGGAAAGAGAGAGAGACGACGAGTACATGAACGAGTTTAGGTTCCGGACAAT GCACGATGATAGCATAAATTACGTGGAGAAGGTGGTGAAGACCGGGGATGAGGTGATCGGAGCGATAGGGAGGGCGGTCCCCGGTTGTGACTTGTACATA TTGGGGCAGAGGAAGGGCGCGGCGTCCTCGGTGATGTTGGGGCTGTCAGAGTGGACGGAGTGCGAGGAGCTGGGCGTCTTGGGGGACACGTTACTGGCGT CGGAATTTGCGGAGCATTCTTCGTTCTTGGTTATCAAGCAGCATTATGTTCCCGGGATGCGGGTGCGGGTGTACCACGGCGGGAATAGTAATAATAATAG CATGGTGATGCTTGATAATGCCCATACGAGTAATGTTGGTCGTGATGGCGGCGGTGATCATATGCCACCGTGGCAACACTCTAATCCTAGAAGTCCCTTC TCTACTTTTCAAATGGGCCCTGGGCCGACCACAGACCCAAAAGGCAACTCATGTTGCCACCATATATCATCAGTGGGACCGAGGCCGCCTTATCCTATCA GTAGGGTCCGGGCCGTCCTGTCTCATCAAGCTCAAGTCCAGCTCAATCTTCACCGGACATTATCGATGGACGGGATCAGCTTGCCTGAGGGAAGTCACCA ATTGATTGATATCATGTGGCAAGCCGAGAAATATATCTCATATAAGAGCATCACGTCAATGAGATTTTCTTCATTTACTAAGTCATGTGAAAAATGA
AA sequence Show only first row Show all	>Lus10013794 pacid=23169078 polypeptide=Lus10013794 locus=Lus10013794.g ID=Lus10013794.BGIv1.0 annot-version=v1.0 MANITWKDDHNNITLRENGGVILEGMSSGVVNLCHMEAVPTNLNNSVFWKLARPKNEHDPSFVYYVLYYFIQLTLILFAIHLFALILKPLRLPRFSVELF AGVMVGPSVLGLRNWYSIYILPPSSLKGFNQPMFAILILSILVISVTVIPLAKAANKSNRRTSQFKHRTVESNKLESELRILTCIHSPRNLSGMINLLES SNASKQYPICVFALHLVQLTERRATAMLIVHDSSSISNRSMFDGSSGQNLSRRKEDSKHIITAFESLETRGPSVSAQSLTVVSPYTTMHEDVSCLGEDKR VTLILVPFHKQADVYGRLQDENLNWRTVNKNLLATATCSVGILIDRGLGSNKDRSTVQSVQQQQSQPLASSTYAVIFIGGPDDREALAFGWRMSKSPSVN FTVLRLISDHEDDREDEDSDQAEEVASIKGSEQGGGANSTTTTPMRSKKEERERDDEYMNEFRFRTMHDDSINYVEKVVKTGDEVIGAIGRAVPGCDLYI LGQRKGAASSVMLGLSEWTECEELGVLGDTLLASEFAEHSSFLVIKQHYVPGMRVRVYHGGNSNNNSMVMLDNAHTSNVGRDGGGDHMPPWQHSNPRSPF STFQMGPGPTTDPKGNSCCHHISSVGPRPPYPISRVRAVLSHQAQVQLNLHRTLSMDGISLPEGSHQLIDIMWQAEKYISYKSITSMRFSSFTKSCEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10013794 [exp]	0	1
					Lus10012983 [exp]	1.0	0.8920
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Lus10020899 [exp]	1.4	0.8027
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	3.0	0.7881
AT2G23755			unknown protein		Lus10000575 [exp]	3.5	0.7579
AT2G03360			Glycosyltransferase family 61 ...		Lus10037124 [exp]	4.5	0.7440
					Lus10024160 [exp]	6.9	0.7212
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10036458 [exp]	8.7	0.6647
AT5G04885			Glycosyl hydrolase family prot...		Lus10008434 [exp]	8.9	0.7035
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10021881 [exp]	9.9	0.6982
AT1G61105			Toll-Interleukin-Resistance (T...		Lus10011216 [exp]	12.5	0.7348

Compare expression of checked genes

Lus10013794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.