Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14570 521 / 0 UBX domain-containing protein (.1.2.3.4) AT4G14250 263 / 9e-80 structural constituent of ribosome (.1.2) AT1G59550 159 / 5e-45 UBX domain-containing protein (.1) AT3G23605 101 / 2e-25 Ubiquitin-like superfamily protein (.1) AT4G11740 44 / 0.0002 SAY1 Ubiquitin-like superfamily protein (.1) AT4G10790 43 / 0.0004 UBX domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039137 [exp] 869 / 0 AT1G14570 519 / 0.0 UBX domain-containing protein (.1.2.3.4) Lus10027684 [exp] 46 / 3e-05 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10029591 [exp] 43 / 0.0006 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098800 [exp] 623 / 0 AT1G14570 554 / 0.0 UBX domain-containing protein (.1.2.3.4) Potri.008G142800 [exp] 618 / 0 AT1G14570 541 / 0.0 UBX domain-containing protein (.1.2.3.4) Potri.015G080200 [exp] 45 / 6e-05 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10013795 pacid=23169126 polypeptide=Lus10013795 locus=Lus10013795.g ID=Lus10013795.BGIv1.0 annot-version=v1.0 ATGGAGCAAATGCTATCCGCAAGCGAGAAGGAGAGCACGGTCTCTTCCTTCCTCGAGATCGCCGTCGGCCAAACTGCTGACACTGCCAGACAGTTCTTGC AGGCCACTAATTGGAAGCTTGATGAGGCTCTTCAACTCTTCTACGTTGGCAATGAAGGACAAGCAGCACCTGCTTCACATACGCCACCTGCGGGTGATCT ATGGCCTACTGAAACTCCTGGGAACGAAACTATTGGGCAAGATGTGGCTGATGAAGTGCGCCCTCCATTACCCGTGTTGAGGGATACTCTCTATGATGAT GCTATGTTGCATGGTGCATCAAGGGTAGTACACTCTTCTCGGGAACCCAGCTCACTGATTGCATTCCGCAACTTTCAAGAGGAAACAATGCATCCTGGGG TCTGGGAATCGGAACAAGGATCTACATCAGCAAATAACCCTCGTGATCTTGCTTCCTTGTATAGGCCTCCATTTCATTTAATGTTCCAGGGGTCATTTGA AAAGGCAAAAGCAGCTGCATCTGTTCAGGACAAATGGCTCCTCATCAATCTGCAATCCACTAAGGAGTTCAGCTCCCATATGCTCAATCGGGATACGTGG GCCAATGAAGCTGTCTCTCAAACCATTAGCACCAACTTCATATTTTGGCAGGTGTACGATGATACCAGTGAAGGTCAGAAAGTCTGTACTTATTACAGAC TAGATTCCATACCAGTTGTGCTGGTCATTGATCCAATCACTGGACAAAAGATGCGCTTGTGGTGTGGTATGGTACAACCGGAATGTCTACTTGAGGATCT AGTTCCATACATGGATGGTGGCCCTAGCGACCACCACAAAACTCTGTCTAACAAACGCCCAAGGGGAGGGTCTCTGACATCACTTAGAAACCAAGATGAT GAACCCAAGGAAGAAGTTCATGAAGTGGTTCGAGCTGCATCTGTTCCTTCGGAGACAATGGTTGACTCAACTGTGGCGGTTCTGGATCATAAAAGTGTCA CCGACACCAAGAAGGACGAAGAAACGAGTTCTTCTAGGAAAACTCATTATCCACCATTACCTGAAGAACCCAAGGGCGATAGGAGTGTCTTGTGCAAGGT TGGACTTCGGTTTCCTGATGGACGTAGGGTTCAGAGAAATTTCCTGAAAACCGATCCAGTACAATTGTTGTGGTCATTCTGCTGTTCAGAGGTGAAAGAA GCTGAGACGAGACCCTTTCGCCTGACACAGGCGATTCCAGGAGCCAAGACTCTGGATTTGGGCAGTAGCGTCACTTTCGCGGAGTCGGGGCTGGAGAACT CTATGATCCTGCTAGCTTGGGAATGA
AA sequence Show only first row Show all	>Lus10013795 pacid=23169126 polypeptide=Lus10013795 locus=Lus10013795.g ID=Lus10013795.BGIv1.0 annot-version=v1.0 MEQMLSASEKESTVSSFLEIAVGQTADTARQFLQATNWKLDEALQLFYVGNEGQAAPASHTPPAGDLWPTETPGNETIGQDVADEVRPPLPVLRDTLYDD AMLHGASRVVHSSREPSSLIAFRNFQEETMHPGVWESEQGSTSANNPRDLASLYRPPFHLMFQGSFEKAKAAASVQDKWLLINLQSTKEFSSHMLNRDTW ANEAVSQTISTNFIFWQVYDDTSEGQKVCTYYRLDSIPVVLVIDPITGQKMRLWCGMVQPECLLEDLVPYMDGGPSDHHKTLSNKRPRGGSLTSLRNQDD EPKEEVHEVVRAASVPSETMVDSTVAVLDHKSVTDTKKDEETSSSRKTHYPPLPEEPKGDRSVLCKVGLRFPDGRRVQRNFLKTDPVQLLWSFCCSEVKE AETRPFRLTQAIPGAKTLDLGSSVTFAESGLENSMILLAWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14570			UBX domain-containing protein ...		Lus10013795 [exp]	0	1
AT2G18770			P-loop containing nucleoside t...		Lus10013024 [exp]	152.6	0.6447

Compare expression of checked genes

Lus10013795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.