Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26150 290 / 9e-97 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 239 / 6e-76 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT1G32330 219 / 2e-67 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G51910 213 / 3e-67 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT3G63350 208 / 2e-65 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT4G17750 211 / 2e-64 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 204 / 2e-61 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 198 / 2e-59 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G43840 187 / 2e-57 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT5G03720 184 / 1e-54 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039134 [exp] 450 / 3e-159 AT2G26150 292 / 7e-97 heat shock transcription factor A2 (.1.2) Lus10039376 [exp] 248 / 8e-80 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 247 / 5e-79 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 230 / 8e-73 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 226 / 4e-71 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 224 / 3e-70 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10011941 [exp] 224 / 3e-69 AT2G26150 241 / 9e-76 heat shock transcription factor A2 (.1.2) Lus10000312 [exp] 222 / 1e-68 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10030956 [exp] 221 / 5e-68 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226800 [exp] 283 / 3e-93 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.002G048200 [exp] 238 / 3e-76 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 238 / 6e-76 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 236 / 2e-75 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G148200 [exp] 239 / 8e-75 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2) Potri.005G214800 [exp] 234 / 1e-74 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.003G095000 [exp] 232 / 4e-72 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.001G138900 [exp] 229 / 6e-71 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 197 / 6e-59 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.006G115700 [exp] 184 / 1e-53 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10013797 pacid=23169118 polypeptide=Lus10013797 locus=Lus10013797.g ID=Lus10013797.BGIv1.0 annot-version=v1.0 ATGGAGGACGTTGTAGTGGTGAAAGATGAACAGTTGGACTCCGGCAGCGGCGACATACCTTCCCCTGCATCTTCTTCTTCGTCGTCCAGCTTCCGGCCGC AGCCGATGGAAGGATTGCACGAGATGGGTCCTCCTCCATTCCTGAGCAAGACTTACGAAATGGTGGAGGATCCGTCCACGGACGCTGTGGTTTCGTGGAG CGAAGCTAGGAACAGCTTCATTGTTTGGGATTCTCACAAATTCTCCACCACTCTGCTCCCTCGCTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGC CAGCTCAACACTTATGGATTCAGGAAGGTGGATCCTGAGAGATGGGAGTTCGGGAACGAAGGGTTTCTGGGAGGGCAGAGGCATTTGCTAAAGACCATCA GGAGGAGAAGAAGACATAACTACTCTTCCTCTGCTAATTCCACTCCTGGAGGACAAAATTGCAGCAGCAAAAAGGTTGCGGAATTGGGCAGTAATTACAG CCTAAAAATGGACCAAGAGATCGAGATGCTAAAGCAGGAACGGAACTCGCTGATGTCCGAGATCGTAAGGATCCGGCAGCAGCAGCATCAGTCCAGGGAT CAGATCGACGCCATGGAGGAGAGGCTGGTGAGGACAGAGAAGAAGCAGCATCAGATGCTGACGTTCCTAGCGAAGGCCATCAAGAACCCCGATTTCGTCC AACAATTGTCGCTCAGGAATAATAATGCCGCTGCTGGGAGGAAAAGGAGACTGGTGAGCAGCACTTGTTGTGATAAGTTGATAGAGACGAGTTCCTGCGT TGTGGTGGATGATGATAACGGTGAAATGACGACGGTTGATGCTGCTGCATCCATTTGGGAGGAGCTGGAGTTGTTTAATGATGACCAAGACGACGACGTT GGAGTTGCTGCTGCTGCTGGTGGAGTGGAGGAATTGGGAGGCAAAGGAGTGGAGGATTGGAGCGATGTGGATGTGCAGGATCTCGTTGATCAGATGGGTT TCTTACGATCTGAGCCGTTCGATTAA
AA sequence Show only first row Show all	>Lus10013797 pacid=23169118 polypeptide=Lus10013797 locus=Lus10013797.g ID=Lus10013797.BGIv1.0 annot-version=v1.0 MEDVVVVKDEQLDSGSGDIPSPASSSSSSSFRPQPMEGLHEMGPPPFLSKTYEMVEDPSTDAVVSWSEARNSFIVWDSHKFSTTLLPRYFKHNNFSSFVR QLNTYGFRKVDPERWEFGNEGFLGGQRHLLKTIRRRRRHNYSSSANSTPGGQNCSSKKVAELGSNYSLKMDQEIEMLKQERNSLMSEIVRIRQQQHQSRD QIDAMEERLVRTEKKQHQMLTFLAKAIKNPDFVQQLSLRNNNAAAGRKRRLVSSTCCDKLIETSSCVVVDDDNGEMTTVDAAASIWEELELFNDDQDDDV GVAAAAGGVEELGGKGVEDWSDVDVQDLVDQMGFLRSEPFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10013797 [exp]	0	1
AT5G07330			unknown protein		Lus10042036 [exp]	4.0	0.8486
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10035781 [exp]	9.9	0.8328
AT1G44414			unknown protein		Lus10018166 [exp]	12.1	0.8142
AT5G35320			unknown protein		Lus10027608 [exp]	13.6	0.7817
AT2G20560			DNAJ heat shock family protein...		Lus10013981 [exp]	15.5	0.7838
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10021776 [exp]	16.3	0.7110
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10013313 [exp]	20.0	0.7376
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	22.9	0.7473
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10010133 [exp]	22.9	0.7928
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10010897 [exp]	24.7	0.7668

Compare expression of checked genes

Lus10013797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.