Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01980 811 / 0 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) AT1G14660 456 / 7e-150 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039133 [exp] 884 / 0 AT2G01980 1319 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140700 [exp] 988 / 0 AT2G01980 1345 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.010G100900 [exp] 976 / 0 AT2G01980 1363 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.007G100500 [exp] 118 / 7e-30 AT2G01980 73 / 7e-15 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013798 pacid=23169071 polypeptide=Lus10013798 locus=Lus10013798.g ID=Lus10013798.BGIv1.0 annot-version=v1.0 ATGTCTTACAATTTCATTTCAGTCTTTGCAAGGGAGGGGGTGACGTTGGGACGGGTGTTACTCTTTCATAGCTCCACCAGTGTCGCTTCTGTGGACCAAT GGTTATTTCAGTGCCCTTCTAACACTTCTCCATTTTGTATGTTTCAGCGAACTAGTGATAGCTCAGCTTATATCAGTCCTGAGACGGGAAAACTGTTTGT TTTCTTCACTGGAGGAATTGTGTTTCTGACACTTATTGTAAATGGATCAACTACCCAATTTGTTTTACGTCTTTTGGATATGGGCAAGCTGTCGGCTACC AAGAAACGTGTATTGGAGTATACAAGATATGAAATGTTGAATAAAGCTCTAGAGGTTTTTGGTGATCTTGGAGATGACGAAGAACTTGGACCAGTGGACT GGCCCACAGTTAAAAGATACATTAAGACCTTGAGTAGTTTGGAAGGAGAAAGTGTACATCCACATGAACAATCAACCAGTACGGGTCTTGACCCTACAAA TCTGAAAGATCTTCGTATACGCCTTCTTAATGGTGTTCAGGCTGCCTACTGGGTGATGCTTGAAGAGGGAAGGATTACACAGGGCACCGCAAATATCTTG ATGCAGTCTATAGATGAAGCGATGGACTCAGCAGCTCATGAGCCTTTATCTGATTGGAAGGGCTTAAAATCAAATGTGAATTTCCCAAGCCACTACAAGT TCCTCCAGACAAGCTACTGCCCCCCAAAACTTGTTACTTATTTCACTGTTGAGAGGCTTGAATCTGCATGTTATATCTGTGCTGCATTTCTGCGTGGCCA CAGAATTGCACGGCAGCAGCTGCATGACTTTATAGGCGACAGTGATATCGCTTCCATTGTCATTTGTGAAAGCGAGGCAGAAGGAGAAGATGCAAGGAAG TTCTTGGAGGATGTTCGTGTTACATTTCCTCAGGTGTTACGTGTAGTGAAGACGAGACAAGTAACATATTCAGTGCTTAACCACTTGATTGAATATGTTC AAAATCTTGAGAAGACAGGGTTGTTAGAGCAGAAGGAGATGCTTCATCTTCATGATGCTGTGCAGACCGACTTGAAAAGGCTGCTGAGAAATCCTCCTCT TGTAAAGATACCCAAAATAAATGATTTGATCAATGTACACCCGCTGTTGGGTGCTCTCCCTCCTGCCATCCGTGAACCACTAGCAGGTTCAAGCAAAGAA ATAATGAAACTGCGTGGTGTTCCGATTTACAGAGAAGGCTCCAATCCCACTGGTGTGTGGTTCATTTCTAACGGTGTTGTCAAGTGGACAAGTAAGAGCA TGAGGAGCAAGTACTCGCTGCATCCAACTTTCGCCCATGGTAGTACACTGGGACTGTACGAGGTGCTAGTACGAAAGCCTTACATCTGTAGCATGGTAAC AGATTCTGTGGTGCTTGGCTTTTTTGTTGAAAGTGAGAAAATACTATCAGCATTAAGCTCTGACCCAGCAGTTGCAGATTTCTTCTGGCAGGAAAGCGCT ATTGTGCTAGCCAAACTCTTACTTCCACAAATATTTGAGAAAATGTCAATGCATGATTTGAGAGCTCTTATTGTTGAAAAGTCGACCATGACCACCTACA TTAGGGGAGAAACCATAGAAATACCTACCCACTCCGTAGGGTTTCTTTTGGAAGGGTTTATAAAATCTCATGGTTTCCAAGAAGAATTGATTACTTCACC GGCAGCTTTATTTCCACAATATGGGAACCAAAGCTCTCAAAATGGGATGTGGTATCAAGTTGAGACAAGAGCAAGAGTGATCATATTCAATACTGCATCA TTTGAAGCTGAGGATGCCCTGAAGAGAAGGTCATCGTCTTTGGTGTCAGTTGATAATCATATGCACAGGCCCCCAAGTAGAGAGCACGGTGGACTCATGA GTTGGCCTGAAAGCTTTTACAAGCAGCAGAAGGAGAAAGACAACCACCAAACAAAGGAAGAGCGGCCAGCCAACAGCTTATCGGCCAAAGCAATGCAGCT AAGCATGTTCGGCAGCATGGTTGACGTCCATGGTGGGCGGGCGCAAAGTTCTTCGAGTAGTGAAGGGAAAGGAACTCGTAACATGGGGAAAGCAGCATCG TTCCATGGGTATCCAAGTGGAGAAGGGCCGTCTTCTTCAGGTAGAGTGAAGAAGGTGGATAGCCAAGAAGCCTCCAATGCTGCGGTGGAAAGTGGGGGCA TCGGCACAGTGCAGAACTTGGAGGAGAGGAGTGAGAGTGAAGATGATGATGATGAGGATGTTATCATAAGAATCGACTCACCAAGTACGCTGTCCTTCCG TCAGGTTTCTGGAGCAAAGCAGTTAGGAGGAGGAGGAGGCTGCGGCTTTGTATTCCAGGTTTGTCAGCCCACCCCCGTCGCCTCGCTAGTCGCCGCCGCT AGTGTTGAGTGA
AA sequence Show only first row Show all	>Lus10013798 pacid=23169071 polypeptide=Lus10013798 locus=Lus10013798.g ID=Lus10013798.BGIv1.0 annot-version=v1.0 MSYNFISVFAREGVTLGRVLLFHSSTSVASVDQWLFQCPSNTSPFCMFQRTSDSSAYISPETGKLFVFFTGGIVFLTLIVNGSTTQFVLRLLDMGKLSAT KKRVLEYTRYEMLNKALEVFGDLGDDEELGPVDWPTVKRYIKTLSSLEGESVHPHEQSTSTGLDPTNLKDLRIRLLNGVQAAYWVMLEEGRITQGTANIL MQSIDEAMDSAAHEPLSDWKGLKSNVNFPSHYKFLQTSYCPPKLVTYFTVERLESACYICAAFLRGHRIARQQLHDFIGDSDIASIVICESEAEGEDARK FLEDVRVTFPQVLRVVKTRQVTYSVLNHLIEYVQNLEKTGLLEQKEMLHLHDAVQTDLKRLLRNPPLVKIPKINDLINVHPLLGALPPAIREPLAGSSKE IMKLRGVPIYREGSNPTGVWFISNGVVKWTSKSMRSKYSLHPTFAHGSTLGLYEVLVRKPYICSMVTDSVVLGFFVESEKILSALSSDPAVADFFWQESA IVLAKLLLPQIFEKMSMHDLRALIVEKSTMTTYIRGETIEIPTHSVGFLLEGFIKSHGFQEELITSPAALFPQYGNQSSQNGMWYQVETRARVIIFNTAS FEAEDALKRRSSSLVSVDNHMHRPPSREHGGLMSWPESFYKQQKEKDNHQTKEERPANSLSAKAMQLSMFGSMVDVHGGRAQSSSSSEGKGTRNMGKAAS FHGYPSGEGPSSSGRVKKVDSQEASNAAVESGGIGTVQNLEERSESEDDDDEDVIIRIDSPSTLSFRQVSGAKQLGGGGGCGFVFQVCQPTPVASLVAAA SVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10013798 [exp]	0	1
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	2.0	0.7623
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10007232 [exp]	3.5	0.7837
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	3.9	0.7967
AT5G18310			unknown protein		Lus10042520 [exp]	8.1	0.7947
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	11.0	0.7108
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10014408 [exp]	15.0	0.7164
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10028232 [exp]	15.4	0.6966
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	21.4	0.7136
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	24.1	0.7392
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	24.5	0.7152

Compare expression of checked genes

Lus10013798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.