Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03250 622 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 533 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G13600 514 / 3e-176 Phototropic-responsive NPH3 family protein (.1) AT3G44820 399 / 1e-130 Phototropic-responsive NPH3 family protein (.1) AT5G66560 374 / 5e-121 Phototropic-responsive NPH3 family protein (.1) AT5G48800 337 / 2e-107 Phototropic-responsive NPH3 family protein (.1) AT3G50840 336 / 3e-107 Phototropic-responsive NPH3 family protein (.1) AT1G03010 310 / 8e-97 Phototropic-responsive NPH3 family protein (.1) AT1G67900 308 / 5e-96 Phototropic-responsive NPH3 family protein (.1.2.3) AT2G47860 308 / 9e-96 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026511 [exp] 1091 / 0 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 581 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 576 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 575 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 573 / 0 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 536 / 0 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 536 / 0 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 391 / 1e-127 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 388 / 1e-126 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G090400 [exp] 714 / 0 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 632 / 0 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 604 / 0 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 534 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 531 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 400 / 3e-131 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 397 / 7e-130 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 393 / 1e-128 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 386 / 2e-125 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 370 / 5e-119 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10013799 pacid=23159451 polypeptide=Lus10013799 locus=Lus10013799.g ID=Lus10013799.BGIv1.0 annot-version=v1.0 ATGGCGTTCCTCAGATTAGGTTCCAAATCTGATTTCCATCGCCAAGGCCTCAATTGGTTTTGCAACAATGGGCTTCCCAGTGATGTCGCTATTGAGGTTG GAGAAATGCGCTTCAATCTCCACAAGTTTCCGTTGTCTTCCAGAAGCGGCCTGTTAAGGAACCTAATCGAACAGCTTCCTCCGGAGGACGGATCCGTTTG TTCACTAAAGCTCCAAGATCTTCCGGGCGGTGCCAGGGCATTCGAGCTTGTCGCCAAATTCTGCTACGGCGTTAAGTTCGATCTCACGGCTTCCAATGTT GTTAGCCTGAGATGTGCGGCGGAATACCTCCGGATGTCTGAAGATTTCGGGGAAAAGAATCTGATCTTACAGACTGAGAATTTTCTGAAAGATGTCTTCA CCGATTGGAAGGATTCGGTCGTGGCTCTGAAATCCTGTCAGGAAATTCTCCTTCCTGCCGAAGATCTCCGCATTGTCTCCAGGTGCATCCTTTCGCTAGC TGCAAAAGCCAGTTCCGACCCGAATTCGAACCACTCGTCACCATCACCGGAGGAGAACGTTTTCGCTTGGAACGGGATTTCGAGATCTGCGAAATTGATA AGCATAGGCGAGGATTGGTGGTTCGAAGATGTCTCGTTTCTTAATTTGCATATATACAAGAGACTAATTCTAGCGGTTGAAGCGAAAGGGATGAAGCCGG AGACGATTTCTGCTTCGGTTATGTATTACTCCAAGAGGTATTTGCCACTTATGACTAAGCAGCAAAAACGGCCGGGTGATATCCCAGCCGCTGCGAATAA GTTGGAAGAAGCGGACCAACGCCTTTATATTTCAGAAGCGGACCAACGCCTTTACTTGGAAGAAGTTGTCACATTGTTGCCTACTCAAAAAGGGGTGACT CCGACCAATTTCCTGCTTTCTCTTCTTCGCACCGCAATTTTTCTGCAGGCGAGCTCGTACTGTAAGGAGAATTTGGAGAGGAGAGCCGGAGCTCAACTCG ATCAGGCAGCATTGCAGGATCTTCTGATACCGAACATGGGGTATTCGGTTGAGACGGTTTACGATATTGATTGTGTTCAACGGATTGTCGATTACTTCCT GTCAAATTCGCAAGAGGCGAATTCGACATCTCCGCTTTATAATAACACAATCGAAGAAGTGCAACAGTTTTTGGCCGAGAGCGAGTCGTCGTTAACTTCG ATGACCATAGTGGCGAGTCTCGTCGACGGATTCCTTTCCGAAGTTGCTCCGGACGTGAACCTGAAGTTGTCGAAATTCGAAACACTTGCCGCCACAATCC CGGACTACGCTAGACCCGTCGATGACGGGCTTTACCATGCGATCGATGTCTACTTGAAGGTGCATCCGTGGTTAACCGAATTGGAAAAAGAGCAGCTTTG TAGGTTGATGAATTGCCAGAAGTTATCGCTAGAAGCCAGCACTCACGCTGCTCAAAACGAGCGGTTGCCTCTTCGTTTGATCATTCAGGTCCTATTCTTC GAACAAATTCGACTCAGGACTACGGTTTCGGGTTGGTTTTTCCTGACCGAGAATCTAGACAACTCTCAACAAACTATTAGCAACAACAACAATAGTCACG AGATCGATCAGCTTCAGCTTTTGAAAAATGAGGAATCATGTCAGGTAGAGAACGAGATCCGAGCAGCTGGAAATGATGGTGTGGACGATGCTGCAATGAA GGAGAGGGTTTCAGAGCTCGAAAAGGAGTGCCAGGAAATGAAAGAGGACATCGAGAAGCTCGTAGTCAAGACGAAGAAAAGCTGGAGGATTTTTTCGAAA AGCTCTCGTTTGAAGCAGAAGTTGCAGTCCTGTAATTCCGAGAAATCGTGCGATTTCAAGGAACCTGAACCTCTCCCGGTATCAAATTCTGTTACTAATG AACTGCAACAAAATCCTGACACGTCAGAGGTTGCACCTCAGAATTTCAGGTTTCATTGA
AA sequence Show only first row Show all	>Lus10013799 pacid=23159451 polypeptide=Lus10013799 locus=Lus10013799.g ID=Lus10013799.BGIv1.0 annot-version=v1.0 MAFLRLGSKSDFHRQGLNWFCNNGLPSDVAIEVGEMRFNLHKFPLSSRSGLLRNLIEQLPPEDGSVCSLKLQDLPGGARAFELVAKFCYGVKFDLTASNV VSLRCAAEYLRMSEDFGEKNLILQTENFLKDVFTDWKDSVVALKSCQEILLPAEDLRIVSRCILSLAAKASSDPNSNHSSPSPEENVFAWNGISRSAKLI SIGEDWWFEDVSFLNLHIYKRLILAVEAKGMKPETISASVMYYSKRYLPLMTKQQKRPGDIPAAANKLEEADQRLYISEADQRLYLEEVVTLLPTQKGVT PTNFLLSLLRTAIFLQASSYCKENLERRAGAQLDQAALQDLLIPNMGYSVETVYDIDCVQRIVDYFLSNSQEANSTSPLYNNTIEEVQQFLAESESSLTS MTIVASLVDGFLSEVAPDVNLKLSKFETLAATIPDYARPVDDGLYHAIDVYLKVHPWLTELEKEQLCRLMNCQKLSLEASTHAAQNERLPLRLIIQVLFF EQIRLRTTVSGWFFLTENLDNSQQTISNNNNSHEIDQLQLLKNEESCQVENEIRAAGNDGVDDAAMKERVSELEKECQEMKEDIEKLVVKTKKSWRIFSK SSRLKQKLQSCNSEKSCDFKEPEPLPVSNSVTNELQQNPDTSEVAPQNFRFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10013799 [exp]	0	1
					Lus10003893 [exp]	5.6	0.9242
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	8.5	0.9180
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10021854 [exp]	8.9	0.8968
					Lus10034352 [exp]	9.8	0.9143
AT2G39440			unknown protein		Lus10040607 [exp]	9.8	0.9119
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	11.0	0.9015
AT3G29760			Haloacid dehalogenase-like hyd...		Lus10027135 [exp]	11.2	0.9063
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	11.4	0.9001
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024933 [exp]	11.4	0.8710
					Lus10018837 [exp]	13.8	0.9076

Compare expression of checked genes

Lus10013799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.