Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37220 241 / 8e-76 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 167 / 4e-47 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G04220 165 / 2e-46 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21010 155 / 1e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G50250 156 / 2e-43 CP31B chloroplast RNA-binding protein 31B (.1) AT2G20990 157 / 7e-42 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G60000 140 / 6e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G53460 141 / 1e-37 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT1G20080 144 / 4e-37 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G52380 131 / 6e-34 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026514 [exp] 378 / 4e-129 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10026515 [exp] 372 / 7e-123 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10002222 [exp] 242 / 3e-76 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 240 / 2e-75 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10009226 [exp] 187 / 1e-52 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 183 / 5e-51 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10023529 [exp] 181 / 1e-50 AT5G04220 498 / 3e-173 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 175 / 4e-48 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10041952 [exp] 167 / 5e-47 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G090700 [exp] 245 / 1e-77 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 242 / 3e-76 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G223900 [exp] 200 / 2e-57 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 195 / 2e-55 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.012G090200 [exp] 163 / 1e-45 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.002G019800 [exp] 162 / 2e-43 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.015G086500 [exp] 156 / 5e-43 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 153 / 1e-42 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.009G134200 [exp] 157 / 9e-42 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.008G172100 [exp] 150 / 2e-41 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10013801 pacid=23159470 polypeptide=Lus10013801 locus=Lus10013801.g ID=Lus10013801.BGIv1.0 annot-version=v1.0 ATGGATCAAATTTCGGTTGTTGCAGATTGGGAAGCATGGCAATATTGGGGCGCAACTACTTCCCTTGAAATTGCTGGTCCCAAACGAGAAGAAGGTATTC GCCCTGGAACTATGAAGACCACAAACCCTCGCTATAACGATCTCCATAAGAAGAAGTACAGAGGGAAACTTATTGTGGAGCTGACATTTAGTCCATTCAG AGAAGAGAACCATAAGCCTGTTGGACGATTGGGTGATTCCACTTCCCTTGATAGTAAGGAATCCAGCAATGATTGTCATGTGGACGACAATACTAGAGGT GGATTGCTTATAGTGACAGTTCTTGGAGCAGAGAATATAGAAGGAAACCACCATAACAACCCTTATGCTCTTGTTGCATTCAGAGGAGAAGAGAAGAGAA CCAAAGTGATGAAGAAGACCAGGGATCCAAAGTGGAACGAGGAGTTCCAGATTGTGGCAGAGGAGTCGCCGGTGAAGGAGAAGATCCGCATAGAAGTGAT GAGTAAGAGGACAGGGTTTGGATTCCGACCCAAGGAAACGTTGGGGTATGTTCAGATCAGTTTAGGAGATGTGGTTCACAATGGGAGGATAAACCAGAAG TACCATTTGATGAACTCCAAGAATGGAGTTATAAGTGTTGACATCCGGCGGAAGTCCTCCTCCATCGTCTCCCTCGCCAAGCCGACTTCCCTCTTCTTCG CCATTCCATCGTCGTCCTCGCTCAAGCTTTCGTGCCTGCGTTCTTCCGTCCCATCTCCTTCGTCTAGGTTTGTGAGGAGGGTTGCGATTTCGAACGAGTA CGACCAGGAGGAAGCCTATGAGCCCAGCTTCTCTCCTGACCTCAAGGTCTTCGTTGGAAATCTCCCTTTCTCTGCCGACAGCGCTCAGCTCGCTGGCCTC TTTGAGACTGCCGGAAATGTTGAGATGGTCGAGGTGATATATGACAAGGTAACTGGAAGGAGCAGGGGGTTTGGTTTCGTCACCATGTCTACTGCTCAGG AAGTTGAAAATGCTGTCCAGCAATTGAATGGCTATGAACTTGATGGAAGAGCACTGAGAGTGAACTCTGGACCTGCTCCTCCTCCTAGAGAGCGAGAATT CTCTAGGGATAGGGAATCTCCTTTCTCCTCTAGAGGGAACAGCAGGGGTGGCGGTGGATATGGTGGTGGTGGTGGTAGCAGGGATGATGGTGGAAACCGT CTTTATGTGGGTAACCTTTCATGGGGTGTTGATAACTCGGCACTTGAGAACTTGTTCAGTGAGCAAGGGATTGTTGTGGAAGCTAGGGTGGTTTATGACA GGGACAGTGGCAGGTCAAGGGGCTTTGGTTTTGTCACCTTCAGCTCACCTGACGAGATGAACAACGCCATTGACTCGTTGAATGGCGCTGAAAGCTCCAA CTCAAGACATAATGTTTCTGCACTCAAAGCTGGATATGTTTACAGCGCATTCGCCGGCGAATGGTGTCCACTCCTCTCCAGCTGCTCGGACCATTTGGCT CCGACTCAGGAGCAACATTTCCCTAACTATGTCTTGAATCCCTGGATATTTGCTTTGTATGAGAAAAAACATGGGATGGAGTCCCTATAG
AA sequence Show only first row Show all	>Lus10013801 pacid=23159470 polypeptide=Lus10013801 locus=Lus10013801.g ID=Lus10013801.BGIv1.0 annot-version=v1.0 MDQISVVADWEAWQYWGATTSLEIAGPKREEGIRPGTMKTTNPRYNDLHKKKYRGKLIVELTFSPFREENHKPVGRLGDSTSLDSKESSNDCHVDDNTRG GLLIVTVLGAENIEGNHHNNPYALVAFRGEEKRTKVMKKTRDPKWNEEFQIVAEESPVKEKIRIEVMSKRTGFGFRPKETLGYVQISLGDVVHNGRINQK YHLMNSKNGVISVDIRRKSSSIVSLAKPTSLFFAIPSSSSLKLSCLRSSVPSPSSRFVRRVAISNEYDQEEAYEPSFSPDLKVFVGNLPFSADSAQLAGL FETAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVENAVQQLNGYELDGRALRVNSGPAPPPREREFSRDRESPFSSRGNSRGGGGYGGGGGSRDDGGNR LYVGNLSWGVDNSALENLFSEQGIVVEARVVYDRDSGRSRGFGFVTFSSPDEMNNAIDSLNGAESSNSRHNVSALKAGYVYSAFAGEWCPLLSSCSDHLA PTQEQHFPNYVLNPWIFALYEKKHGMESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10013801 [exp]	0	1
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Lus10026514 [exp]	1.0	0.9783
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	4.0	0.9557
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	6.0	0.9491
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	8.1	0.9417
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	8.8	0.9379
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	9.2	0.9417
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	11.5	0.9361
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	12.2	0.9276
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	13.6	0.9291
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	13.9	0.9255

Compare expression of checked genes

Lus10013801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.