Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03290 643 / 0 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 613 / 0 IDH-VI isocitrate dehydrogenase VI (.1) AT4G35260 343 / 1e-116 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT4G35650 330 / 8e-112 IDH-III isocitrate dehydrogenase III (.1) AT2G17130 330 / 2e-111 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT1G32480 179 / 7e-55 IDH-IV isocitrate dehydrogenase IV (.1) AT5G14200 149 / 2e-41 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G31180 149 / 2e-41 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1) AT1G80560 146 / 5e-40 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT1G65930 49 / 2e-06 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026519 [exp] 738 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 721 / 0 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 699 / 0 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10041824 [exp] 338 / 8e-115 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10028374 [exp] 338 / 1e-114 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 323 / 8e-109 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 299 / 4e-100 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10030344 [exp] 154 / 9e-42 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 143 / 5e-39 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091200 [exp] 670 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.006G126700 [exp] 659 / 0 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.004G204300 [exp] 339 / 4e-115 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.005G099600 [exp] 336 / 8e-114 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 334 / 2e-113 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.007G064000 [exp] 331 / 5e-112 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.001G185600 [exp] 150 / 8e-42 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Potri.001G347800 [exp] 48 / 6e-06 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.017G144541 [exp] 47 / 1e-05 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.004G074900 [exp] 47 / 1e-05 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10013806 pacid=23159496 polypeptide=Lus10013806 locus=Lus10013806.g ID=Lus10013806.BGIv1.0 annot-version=v1.0 ATGGCGTTCCAGCAGCTCATGAGGCGCGCTCTCAGAAGCCGCCCCGACCAGATCCTCTCCACTTCCTCCGCCGCTAGGCCTTTCTCCTCCGCTCCCATTA CGGCAACTCTCTTCCCCGGCGACGGTATCGGCCCCGAGATCGCCGAGTCCGTTAAGCAGGTGTTCAGGGAAGCTGAGGTACCAATACAATGGGAAGAACA TTACGTTGGAACTGACATAGATCCTAGAACCCAGAGCTTTCTGACATGGGAAAGTTTAGAGTCAGTAAGAAGAAACCGAGTGGGTTTGAAAGGGCCAATG GCTACCCCAATCGGAAAAGGCCATCGTTCATTGAACCTTACTCTCAGGAAAGAACTTAATTTGTATGCCAATGTCAGGCCTTGCTACAGCCTTCCTGGTT ACAAAACCAAATACGATGATGTGAATCTCATCACCATTCGTGAAAACACTGAAGGAGAATACAGTGGGCTTGAGCACCAAGTGGTGAGAGGTGTAGTTGA AAGTCTCAAGATCATTACTCGTCAGGCCAGTTTGAGGGTGGCCGAATATGCTTTCCACTATGCAAAGGCTCATGGGAGGAAGAGAGTGTCTGCCATACAT AAAGCTACTATCATGCAGAAAACCGATGGTCTTTTCCTCAAGTGCTGTCGTGAGGTTGCTGAAAAGTATCCTGAGATTACTTACGAGGAGGTTGTCATTG ACAACTGTTGCATGATGCTTGTGAAAAATCCAGCTCTTTTTGATGTACTGGTTATGCCTAACCTCTACGGTGACATCATCAGTGATCTTTGTGCTGGTTT GATTGGTGGTCTCGGGTTGACACCAAGCTGCAATATTGGAGAGGGAGGAATTGCTCTTGCCGAGGCTGTCCATGGCTCCGCCCCTGACATTGCTGGGAAG AACCTGGCGAACCCAACTGCTCTGCTACTGAGTGGTGTGTCCATGCTGCGGCATCTAGAACTCCACGATAAGGCAGAAAGGATTCAGAAGGCCGTTCTGG ACACCATCGCCGAAGGCAAGTACCGAACAGCTGATCTAGGTGGTAGCTCTACAACATCTGATTTTACAAAGGCCATCTGCGACCATCTTTGA
AA sequence Show only first row Show all	>Lus10013806 pacid=23159496 polypeptide=Lus10013806 locus=Lus10013806.g ID=Lus10013806.BGIv1.0 annot-version=v1.0 MAFQQLMRRALRSRPDQILSTSSAARPFSSAPITATLFPGDGIGPEIAESVKQVFREAEVPIQWEEHYVGTDIDPRTQSFLTWESLESVRRNRVGLKGPM ATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTKYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKAHGRKRVSAIH KATIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGK NLANPTALLLSGVSMLRHLELHDKAERIQKAVLDTIAEGKYRTADLGGSSTTSDFTKAICDHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	0	1
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10026519 [exp]	2.0	0.9575
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	3.9	0.9379
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	3.9	0.9275
AT3G06180			Ribosomal protein L34e superfa...		Lus10004432 [exp]	4.2	0.9206
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027857 [exp]	4.5	0.9175
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10031982 [exp]	4.8	0.9031
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	5.5	0.9426
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10003076 [exp]	6.0	0.9359
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010187 [exp]	7.3	0.9078
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	10.2	0.9208

Compare expression of checked genes

Lus10013806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.