Plant FIBer expression Database

Lus10013807 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37035 322 / 3e-106 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026520
[exp]
735 / 0 AT2G37035 434 / 5e-150 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G126600
[exp]
491 / 3e-172 AT2G37035 360 / 5e-121 unknown protein
Potri.016G091400
[exp]
480 / 9e-168 AT2G37035 337 / 6e-112 unknown protein
PFAM info
Representative CDS sequence
>Lus10013807 pacid=23159420 polypeptide=Lus10013807 locus=Lus10013807.g ID=Lus10013807.BGIv1.0 annot-version=v1.0
ATGACCGATCAGCCGCGGCTGAGCATCAACAATCTACGGCGGACGACTCACCTTTTCAAAGAAGCTACAGCTTCCTTCTCCTCCAATTTCTTCACATTCC
TCTTCCTGTCTCTCCTCCTCTTCTCTTTCCGAGCTCTCGTAGAGAATGGGGCCGGCCTCCTCACATCCTTCATCGATCGCGACCCTTCCCTCAAATCCCT
ACTCTCCCGCCTTGACCTGGCCGGCAACCACCACGAACAACCTAACGGCGTTAACGAGATCCGCTCTCGCTTCCACCGTCGACGCCGTCCCTTCCTCCAC
CTTACTCGCGTCGGAACCCTAGATGACGATTTCTTCTCCGAAGACGATGATCCAGACCGATCTCTCTTCGGCTCCAATCGCATGATTCCCCCAAATGTGA
GTGCTTTGATTCTCAACAATTTTAATCCGAGATACGGTTACTCCGAATTGGTCGTGGATAATGGAATTAGGGTTCCGGAAATTGTTCGCTCTGGGGTTCA
GTTCAAGGCGGAGAATAGTGTGCGGGTTGAGGATAGTGGAGCGGACGAGATTGATTACGGTGGGAATGGGGGTTTTCAGTTCTTCGTGAAGGGATTGGAG
CTCGGCGGCGGAGATGCGGCGTCACTTTTCTACCTAGTGAGTTTCTTGTCTGCAGCTTATGGTTGGGTGATCCTTGGTTTCACAGCAATGTACTCGTGGA
TATTGGGAATTGTGTTCGTTGCTGTGGTGAATGATTTGTTAAAAAGGTTCAATTCATTTGCTGACATTGTTTGGGATGGTTCTAGATTGGGGCTCAAGAA
ACTTACCGGGTTCATTCTGATGAGATGGGCAGTTAGGGATGCTTTGACACAGCTGGTAGGATTGTGGTACTTTGGTGAAGTTAAGGATCAGTTTTCGTTT
TTCAAGCTATTTGTGAAGTTAAAGTTGATGCCTTTCTCAGTTATGTCTCCATGGATTGAAGGATATGAGAAGGAGGTATCAGGTTTCTTGTTCACTTGGC
TTCTGTTGGATACTTTGGTGGGGTTAATATTTGCAGTGGATGCTTGGGTTACAGTCGTTGATTCCAGGAGAACTGGTAGGGAGATTGTGAAGGAAGGTTG
TTACTTGATATCGACATTGTTCCACCAAGCTGTTCAGATAAGGTGTATTGAAGCAATCCTCTGTGGATCCGCGACTAGATGGGTCTTATCCCGGATAGTT
GGGAAGCATTTTGCTGCGGTGCTCCAATCCGTTGTGGAGGTTTACTTCATGGTGGCCTGGCTGATATTTTACTTTGCAGCAAGATACAAAGAAGCTCACT
CTGAAGGAAGAAGGTTTGGGAGGAGAGAACTGGAAAGGTTATTTGATGGCCTTAGATGA
AA sequence
>Lus10013807 pacid=23159420 polypeptide=Lus10013807 locus=Lus10013807.g ID=Lus10013807.BGIv1.0 annot-version=v1.0
MTDQPRLSINNLRRTTHLFKEATASFSSNFFTFLFLSLLLFSFRALVENGAGLLTSFIDRDPSLKSLLSRLDLAGNHHEQPNGVNEIRSRFHRRRRPFLH
LTRVGTLDDDFFSEDDDPDRSLFGSNRMIPPNVSALILNNFNPRYGYSELVVDNGIRVPEIVRSGVQFKAENSVRVEDSGADEIDYGGNGGFQFFVKGLE
LGGGDAASLFYLVSFLSAAYGWVILGFTAMYSWILGIVFVAVVNDLLKRFNSFADIVWDGSRLGLKKLTGFILMRWAVRDALTQLVGLWYFGEVKDQFSF
FKLFVKLKLMPFSVMSPWIEGYEKEVSGFLFTWLLLDTLVGLIFAVDAWVTVVDSRRTGREIVKEGCYLISTLFHQAVQIRCIEAILCGSATRWVLSRIV
GKHFAAVLQSVVEVYFMVAWLIFYFAARYKEAHSEGRRFGRRELERLFDGLR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37035 unknown protein Lus10013807
[exp]
0 1
AT2G37035 unknown protein Lus10026520
[exp]
2.2 0.7899
AT1G59900 AT-E1 ALPHA, AT... pyruvate dehydrogenase complex... Lus10029216
[exp]
8.5 0.7769
AT1G59900 AT-E1 ALPHA, AT... pyruvate dehydrogenase complex... Lus10010728
[exp]
9.4 0.7508
AT2G44520 COX10 cytochrome c oxidase 10 (.1) Lus10043358
[exp]
11.0 0.7335
AT1G49230 RING/U-box superfamily protein... Lus10005817
[exp]
12.8 0.7666
AT4G17080 Histone H3 K4-specific methylt... Lus10042858
[exp]
13.6 0.7634
AT5G64660 ATCMPG2 "CYS, MET, PRO, and GLY protei... Lus10005810
[exp]
18.7 0.7310
AT2G40830 RHC1A RING-H2 finger C1A (.1.2.3) Lus10030755
[exp]
23.9 0.6966
AT3G04120 GAPC1, GAPC-1, ... glyceraldehyde-3-phosphate deh... Lus10006435
[exp]
26.9 0.7620
AT5G11770 NADH-ubiquinone oxidoreductase... Lus10014530
[exp]
35.8 0.7271

Lus10013807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.