Plant FIBer expression Database

Lus10013810 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026522
[exp]
384 / 3e-133 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G126300
[exp]
56 / 1e-08 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2)
PFAM info
Representative CDS sequence
>Lus10013810 pacid=23159483 polypeptide=Lus10013810 locus=Lus10013810.g ID=Lus10013810.BGIv1.0 annot-version=v1.0
ATGGCGGCCACCTGTCCCGAGGACGCAGCGGCCGGACCCCAAACCACACATTATTCGCAAGGCAGTACGCAGAGAAACGTAAAGGTAGATGATTTCTTAC
TTCCTGGATCACGAAGGGAAGCACATCAAGTTCAGCCCTGGCTCGCAGTGGCAGAACAACCTAGAGTACAGAATGTTTCGACGGATGGCTTGTCATGGTT
TCGTAACGACACTTCTTGGAACAACTCGGGAGTTGAGGAATTCCTGCGGGCTTTAGAGTATAACCCAATAGGTGGGTTGGGTCACTATAGCACTGGAGCA
CAAGATGCCTCAGAGCTTGGAGTTCTTGATGATCTGCTTGGGGGCATGCCCGAGACAGGTCATTTTCTTGCAGCAAGCGAGATATGTAGAGAATACGAAG
ATATTGCTGGAGCTGACAAGGTCTTCTTCGAAGCGAACCATGATATGTCCAAGGGATTAGTACCAAGGAACTCAAGTTCAGAGAGTCAACTCAATGTTGC
TTATATAGGGACAGCAGAATCAACTACAGCAGCAGCAGATGTTCTGGAAGCTCAATTCAAGACTACTGGTTCAGTTACCAAGACAAGGATTTGTCCACCA
GAGATGCATGGAACAAGATTAGATTTTGAAGCCAGTTATGACATTTCCGGTAATAATCTGGAATGTTGTGAGCAAGAGAATCATGATCAGATCGATACGG
AGCCTTCGGCACCTGGGTGGAAATGGAAGAGTGCTGGTAGAAGCTTTTAG
AA sequence
>Lus10013810 pacid=23159483 polypeptide=Lus10013810 locus=Lus10013810.g ID=Lus10013810.BGIv1.0 annot-version=v1.0
MAATCPEDAAAGPQTTHYSQGSTQRNVKVDDFLLPGSRREAHQVQPWLAVAEQPRVQNVSTDGLSWFRNDTSWNNSGVEEFLRALEYNPIGGLGHYSTGA
QDASELGVLDDLLGGMPETGHFLAASEICREYEDIAGADKVFFEANHDMSKGLVPRNSSSESQLNVAYIGTAESTTAAADVLEAQFKTTGSVTKTRICPP
EMHGTRLDFEASYDISGNNLECCEQENHDQIDTEPSAPGWKWKSAGRSF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10013810
[exp]
0 1
AT2G37025 TRFL8 TRF-like 8 (.1.2) Lus10013809
[exp]
1.0 0.8855
AT5G26040 HDA2 histone deacetylase 2 (.1.2) Lus10024990
[exp]
3.0 0.8783
AT2G37025 TRFL8 TRF-like 8 (.1.2) Lus10026522
[exp]
5.3 0.8488
AT1G06980 unknown protein Lus10006211
[exp]
10.0 0.8656
AT2G43190 ribonuclease P family protein ... Lus10019913
[exp]
12.0 0.8436
Lus10022017
[exp]
14.1 0.8835
AT1G73350 unknown protein Lus10031897
[exp]
15.2 0.8682
AT4G08690 Sec14p-like phosphatidylinosit... Lus10020911
[exp]
20.7 0.8624
AT2G28230 TATA-binding related factor (T... Lus10030654
[exp]
22.3 0.8467
AT2G22540 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOU... Lus10025719
[exp]
24.3 0.8265

Lus10013810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.