Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09830 146 / 8e-43 Protein kinase superfamily protein (.1.2) AT5G03320 137 / 1e-39 Protein kinase superfamily protein (.1) AT2G28940 70 / 9e-15 Protein kinase superfamily protein (.1.2) AT5G02290 66 / 2e-13 NAK Protein kinase superfamily protein (.1.2) AT1G07570 63 / 2e-12 APK1A Protein kinase superfamily protein (.1.2.3) AT1G14370 63 / 2e-12 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT1G69790 62 / 5e-12 Protein kinase superfamily protein (.1) AT2G39110 62 / 6e-12 Protein kinase superfamily protein (.1) AT5G15080 61 / 1e-11 Protein kinase superfamily protein (.1) AT2G28930 61 / 1e-11 APK1B protein kinase 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026523 [exp] 254 / 2e-88 AT3G09830 151 / 6e-45 Protein kinase superfamily protein (.1.2) Lus10038711 [exp] 117 / 9e-32 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 110 / 5e-29 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 67 / 8e-14 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 62 / 7e-12 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 61 / 2e-11 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 61 / 2e-11 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10021489 [exp] 60 / 3e-11 AT2G02800 459 / 3e-161 protein kinase 2B (.1.2) Lus10022591 [exp] 60 / 3e-11 AT2G02800 462 / 2e-162 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126000 [exp] 186 / 1e-57 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G036800 [exp] 132 / 9e-38 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 123 / 3e-34 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.009G031500 [exp] 91 / 6e-22 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 90 / 1e-21 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G052700 [exp] 69 / 2e-14 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.006G072200 [exp] 66 / 3e-13 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.010G203400 [exp] 62 / 4e-12 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 62 / 5e-12 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G148000 [exp] 60 / 3e-11 AT2G02800 604 / 0.0 protein kinase 2B (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013811 pacid=23159436 polypeptide=Lus10013811 locus=Lus10013811.g ID=Lus10013811.BGIv1.0 annot-version=v1.0 ATGAAGTGCTTTCACTTCTATATCGGAGAAAGGAAGGATGATCTAAGGACAACAAAGTCTACATCAGTTACGTCGCTGTACTCGAATTTTACTGATCGTG AAATGGGGAGATCGGGGTCTGAGTTGAATTCTCAAAATGTCTCAGCCACCAGTGTAGAATCAATGGGGAGGCCTAGCTACCCTATTCTGTCCCAGAGACC AAGTAATCTGAGATCTTTCACTGTTTCCGAACTTAAGGCCGCCACCAGGAACTTCAGTCGCTCCTTCATGGTTGGAGAGGGCGGATTTGGATGCGTCTAC AGAGGATCCATAAAGAGTGCAGAGGAGCCTCTCAAAAAAATTGAAGTCGCTGTGAAACAGCTTGGTAAAAGGGGAACTCAGGCAAGTCTTTCCCCTCTAG GCAGTCCTCTATCTTCATTTAGTAGTTACTGA
AA sequence Show only first row Show all	>Lus10013811 pacid=23159436 polypeptide=Lus10013811 locus=Lus10013811.g ID=Lus10013811.BGIv1.0 annot-version=v1.0 MKCFHFYIGERKDDLRTTKSTSVTSLYSNFTDREMGRSGSELNSQNVSATSVESMGRPSYPILSQRPSNLRSFTVSELKAATRNFSRSFMVGEGGFGCVY RGSIKSAEEPLKKIEVAVKQLGKRGTQASLSPLGSPLSSFSSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09830			Protein kinase superfamily pro...		Lus10013811 [exp]	0	1
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011860 [exp]	1.0	0.7781
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10027805 [exp]	4.2	0.7483
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10016740 [exp]	5.3	0.7753
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	11.3	0.7428
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	17.4	0.7688
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003113 [exp]	18.0	0.6961
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	18.2	0.7065
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	19.5	0.7579
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10009213 [exp]	20.1	0.7298
AT1G79710			Major facilitator superfamily ...		Lus10024099 [exp]	20.8	0.7304

Compare expression of checked genes

Lus10013811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.