Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09830 332 / 1e-113 Protein kinase superfamily protein (.1.2) AT5G03320 323 / 4e-110 Protein kinase superfamily protein (.1) AT2G39110 308 / 4e-104 Protein kinase superfamily protein (.1) AT2G28940 292 / 6e-99 Protein kinase superfamily protein (.1.2) AT3G28690 240 / 3e-78 Protein kinase superfamily protein (.1.2.3) AT5G15080 243 / 4e-78 Protein kinase superfamily protein (.1) AT3G01300 243 / 8e-78 Protein kinase superfamily protein (.1) AT1G61590 221 / 4e-70 Protein kinase superfamily protein (.1) AT5G47070 215 / 5e-68 Protein kinase superfamily protein (.1) AT1G14370 215 / 6e-68 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026524 [exp] 465 / 1e-168 AT3G09830 342 / 2e-117 Protein kinase superfamily protein (.1.2) Lus10038711 [exp] 330 / 5e-112 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 327 / 3e-110 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 295 / 2e-98 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 295 / 3e-98 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 240 / 1e-76 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 240 / 1e-76 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10033294 [exp] 220 / 2e-70 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10040135 [exp] 220 / 2e-70 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126000 [exp] 357 / 1e-122 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G036800 [exp] 328 / 4e-112 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 327 / 1e-111 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.001G240500 [exp] 293 / 6e-98 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G031500 [exp] 283 / 7e-94 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G123800 [exp] 247 / 2e-79 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 246 / 3e-79 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.014G052700 [exp] 238 / 1e-76 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 236 / 2e-75 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 234 / 8e-75 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013812 pacid=23159489 polypeptide=Lus10013812 locus=Lus10013812.g ID=Lus10013812.BGIv1.0 annot-version=v1.0 ATGCCTAATGGAAGTGTCGAGGATCATCTGTCCAGTCGGGCAGAAACACCTCTCCCATGGAACATGAGACTCCGAGTTGCACAAGATGCTGCACGTGGCT TAACTTACCTTCACGAAGAAATGGATTTCCAGATAATCTTCAGGGACTTCAAATCTTCAAATATCCTACTAGATGAGCAGTGGAACGCCAAACTATCAGA TTTTGGATTGGCAAGGTTGGGCCCGGATGAAGGATTCACTCATGTCTCAACAGCGGTTGTTGGTACAATGGGATATGCGGCTCCGGAATACGTCCAAACT GGACGCCTCACGTCAAAAAGCGACGTATGGAGTTACGGTGTCTTTCTCTACGAGCTCCTCACAGGTAGGCGCCCCATGGATCGAAACCGACCCAGGAACG AGCAAAAACTGTTGGATTGGGTGAAGCCTCACCTGTCAGAGAAGAAGTTCCCGCATATTCTGGACCCTAGGCTGCACGGCAAATACCGGCTAAGGTCAGC GCAGAAGCTCGCCAATATAGCAAACAAGGTTATGGTTAGAAACCCAAAGGCGCGCCCCAAGATGAGCGAGGTGCTGGAAATGGTGAACCGGGTTGTGGAT TCATCGACAGAATCGTCAAGTCCTGAATTAAGCTTCAAGAGCTCAGCATCAATGGCGAAGAAAAGGAATGAAGAATTGAAAGCCCTGGATGGCAGTTGGT TCATGAGGGTGTGCACACCAAGGCTAGTCAGAAGTTGCTGA
AA sequence Show only first row Show all	>Lus10013812 pacid=23159489 polypeptide=Lus10013812 locus=Lus10013812.g ID=Lus10013812.BGIv1.0 annot-version=v1.0 MPNGSVEDHLSSRAETPLPWNMRLRVAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPDEGFTHVSTAVVGTMGYAAPEYVQT GRLTSKSDVWSYGVFLYELLTGRRPMDRNRPRNEQKLLDWVKPHLSEKKFPHILDPRLHGKYRLRSAQKLANIANKVMVRNPKARPKMSEVLEMVNRVVD SSTESSSPELSFKSSASMAKKRNEELKALDGSWFMRVCTPRLVRSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	0	1
AT3G09830			Protein kinase superfamily pro...		Lus10026524 [exp]	2.0	0.8691
AT1G61065			Protein of unknown function (D...		Lus10018474 [exp]	2.0	0.8528
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	3.6	0.8068
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	4.5	0.8292
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10029939 [exp]	5.0	0.7881
AT4G25150			HAD superfamily, subfamily III...		Lus10013478 [exp]	5.5	0.8166
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	7.4	0.8109
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	7.5	0.8220
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10021385 [exp]	8.3	0.8465
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	8.4	0.8257

Compare expression of checked genes

Lus10013812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.