Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03330 280 / 3e-92 Cysteine proteinases superfamily protein (.1.2) AT5G04250 236 / 1e-75 Cysteine proteinases superfamily protein (.1.2) AT3G02070 224 / 2e-72 Cysteine proteinases superfamily protein (.1) AT3G22260 204 / 2e-64 Cysteine proteinases superfamily protein (.1.2.3) AT2G39320 96 / 2e-23 Cysteine proteinases superfamily protein (.1) AT5G67170 67 / 4e-12 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 54 / 1e-07 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026525 [exp] 647 / 0 AT5G03330 292 / 4e-97 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 383 / 5e-133 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10001404 [exp] 380 / 7e-132 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10037977 [exp] 257 / 3e-83 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10038708 [exp] 254 / 4e-82 AT5G04250 367 / 2e-126 Cysteine proteinases superfamily protein (.1.2) Lus10037388 [exp] 246 / 8e-80 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2) Lus10010459 [exp] 202 / 7e-64 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10027312 [exp] 203 / 3e-63 AT3G22260 303 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Lus10003816 [exp] 172 / 6e-52 AT3G22260 298 / 2e-103 Cysteine proteinases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G094700 [exp] 385 / 5e-134 AT5G03330 316 / 9e-107 Cysteine proteinases superfamily protein (.1.2) Potri.006G125900 [exp] 370 / 5e-128 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 264 / 6e-86 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.008G036700 [exp] 263 / 2e-85 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.016G019700 [exp] 225 / 1e-72 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 224 / 1e-72 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.008G036900 [exp] 212 / 2e-68 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.006G021700 [exp] 211 / 2e-67 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.005G140500 [exp] 70 / 5e-13 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.004G196800 [exp] 51 / 7e-07 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10013813 pacid=23159415 polypeptide=Lus10013813 locus=Lus10013813.g ID=Lus10013813.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCTCGCGATCACGATTCCGAATCGGATGTAATCCGGTGGGGGATGAGCCTTCTGGAAGTGGACCCGCCCTTTTATCCCGGCTACTACGGCG GCGAAACAATTCAAAACGACCATGCCTATCATCACCTTCCTCGCCATGATGATTACGAAGCTGAAGACAACGACGAAATCATAGCTCGTACACTTCAGGA GGATTTCTCCCAGCTCGCTCCCAGAGACTCTTCAAGGTATTCCCGTGAACAAGAAGCGGAAGACTACTCCCGTCCGTCCTATTACGGCGACAGCGACTGG CCTACTACCTCGACGAGTTACGATTCGTTTGATCACGATCGTCGCAATGAGGATTCTGATGATACGGTTTCCTCTTGCTTATGTTCAAGCCCTAGCAATG GGGAGCGACGGAAATTGTATCCTTCCGGATTAGCGGGTGATTATCGATTGGATGGTGAAGTAGGCAAAAGGTTGAATGAGTTTATACCCATTCGTCATGT TCCTAAGATGAATGGAGAAATACCTTCATTTGATGAAGTAGCATCAGACCATGAGAGGCTTCTGAATAGATTGGAGGCATTTGGTTTTGCTGAGGTCAAG GTTCAAGGGGATGGGAACTGTCAGGTTTTTCGAGCATTATCAGATCAATTATATGGAACTCCAGAAAGCCACAAAACTGTTAGAAAAGAGATTGTAAAAC AGCTAAAATCCAACCCTGAGATGTATGAAGGATATGTTCCCATGAAGTATCGTGAATACTTGAGCAACATGTCCAGATCTGGTGAATGGGGTGACCACGT CACATTGCAGGCAGCAGCTGATTCGTATGCCGTGAAAATACTCGTCATAACTTCATTCAAGGAGACTTCCTCCATAGAGATTGTCCCACGAAAGAAGAAG CCACAGAGAGTCATCTTCTTGAGTTTCTGGGCGGAGGTACATTACAATGCAATCTGTTTCCGCAATAGAGACACAGCGGGGTCGGAACCTGATAAGAAGA CGAAGAAGAAACGAAGGTGGATATTTGGCAAGAAACACTGA
AA sequence Show only first row Show all	>Lus10013813 pacid=23159415 polypeptide=Lus10013813 locus=Lus10013813.g ID=Lus10013813.BGIv1.0 annot-version=v1.0 MAAARDHDSESDVIRWGMSLLEVDPPFYPGYYGGETIQNDHAYHHLPRHDDYEAEDNDEIIARTLQEDFSQLAPRDSSRYSREQEAEDYSRPSYYGDSDW PTTSTSYDSFDHDRRNEDSDDTVSSCLCSSPSNGERRKLYPSGLAGDYRLDGEVGKRLNEFIPIRHVPKMNGEIPSFDEVASDHERLLNRLEAFGFAEVK VQGDGNCQVFRALSDQLYGTPESHKTVRKEIVKQLKSNPEMYEGYVPMKYREYLSNMSRSGEWGDHVTLQAAADSYAVKILVITSFKETSSIEIVPRKKK PQRVIFLSFWAEVHYNAICFRNRDTAGSEPDKKTKKKRRWIFGKKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	0	1
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	4.6	0.7780
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	5.3	0.8124
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	9.9	0.7537
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	10.4	0.7471
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	11.8	0.7960
AT4G36980			unknown protein		Lus10019346 [exp]	11.8	0.7738
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	12.2	0.7324
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	13.6	0.7761
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10028232 [exp]	14.7	0.7292
AT3G07550			RNI-like superfamily protein (...		Lus10041087 [exp]	17.0	0.7260

Compare expression of checked genes

Lus10013813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.