Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004093 [exp] 70 / 4e-16 ND 39 / 6e-04 Lus10032472 [exp] 67 / 2e-15 ND 35 / 0.004 Lus10029656 [exp] 63 / 2e-13 ND / Lus10022142 [exp] 61 / 8e-13 ND / Lus10023773 [exp] 61 / 2e-12 ND / Lus10029497 [exp] 61 / 3e-12 ND / Lus10011629 [exp] 56 / 1e-10 ND 39 / 6e-04 Lus10039269 [exp] 40 / 0.0002 ND / Lus10014888 [exp] 0 / 1 ND 39 / 7e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013815 pacid=23159502 polypeptide=Lus10013815 locus=Lus10013815.g ID=Lus10013815.BGIv1.0 annot-version=v1.0 ATGTGGAGGTTGAAGAGCTCCTCTCTGAAGGACGAGCTCATCTATGATGATGAGAAAGTAGTATGCCATTGCGGCTTGGGAGCGTCTAGGCGTATATCGC ACACCTCCACGAACCCTGGAAAGAAATTCTCTGGTTGCCTTCGATTTGTCTCAGGTGAAGGTTGCTGCGACGAAAGAGAAGCAAGAGCTGGTTCAAATGG TGGAGAGATTGTAGGTACACGTCGGGAAACTCAAACAAGCCAACATACAGCTGGAGTCCAAGATTATAGATGCCCATTTATCGAAGGAAGAGGAAGTCTG CTTGTCTTCGAATATGAGAATGGTGGACTGCGACATTGTTGGGGAGTTGGAGATGTTGAAATATTGGGTGGGTTTGCTGGAGAAAAAAAGGGTGTTGTGG ACATGACAATATAA
AA sequence Show only first row Show all	>Lus10013815 pacid=23159502 polypeptide=Lus10013815 locus=Lus10013815.g ID=Lus10013815.BGIv1.0 annot-version=v1.0 MWRLKSSSLKDELIYDDEKVVCHCGLGASRRISHTSTNPGKKFSGCLRFVSGEGCCDEREARAGSNGGEIVGTRRETQTSQHTAGVQDYRCPFIEGRGSL LVFEYENGGLRHCWGVGDVEILGGFAGEKKGVVDMTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013815 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	11.2	0.8799
AT2G30933			Carbohydrate-binding X8 domain...		Lus10020765 [exp]	11.3	0.8267
AT4G32480			Protein of unknown function (D...		Lus10039838 [exp]	11.7	0.8609
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	15.6	0.8734
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	19.1	0.8700
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	24.5	0.8663
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	25.5	0.8637
AT2G28680			RmlC-like cupins superfamily p...		Lus10005880 [exp]	25.5	0.7861
AT2G42760			unknown protein		Lus10029248 [exp]	29.1	0.8590
AT3G19540			Protein of unknown function (D...		Lus10028070 [exp]	29.3	0.8607

Compare expression of checked genes

Lus10013815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.