Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34340 259 / 3e-84 TAF8 TBP-associated factor 8 (.1) AT5G15570 165 / 2e-47 Bromodomain transcription factor (.1) AT3G02160 156 / 5e-44 Bromodomain transcription factor (.1) AT1G31240 94 / 5e-22 Bromodomain transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026530 [exp] 638 / 0 AT4G34340 270 / 2e-88 TBP-associated factor 8 (.1) Lus10040612 [exp] 103 / 1e-25 AT1G31240 122 / 1e-33 Bromodomain transcription factor (.1) Lus10018295 [exp] 95 / 3e-22 AT1G31240 126 / 6e-35 Bromodomain transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092000 [exp] 412 / 4e-144 AT4G34340 246 / 6e-79 TBP-associated factor 8 (.1) Potri.006G125200 [exp] 411 / 1e-143 AT4G34340 198 / 2e-60 TBP-associated factor 8 (.1) Potri.017G094900 [exp] 256 / 1e-82 AT5G15570 233 / 3e-73 Bromodomain transcription factor (.1) Potri.004G116200 [exp] 245 / 3e-78 AT5G15570 237 / 8e-75 Bromodomain transcription factor (.1) Potri.015G118200 [exp] 110 / 8e-28 AT1G31240 137 / 4e-39 Bromodomain transcription factor (.1) Potri.012G119500 [exp] 100 / 3e-24 AT1G31240 141 / 2e-40 Bromodomain transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10406 [flax] [poplar] TAF8_C Transcription factor TFIID complex subunit 8 C-term CL0012 [flax] [poplar] Histone PF07524 [flax] [poplar] Bromo_TP Bromodomain associated
Representative CDS sequence Show only first row Show all	>Lus10013818 pacid=23159468 polypeptide=Lus10013818 locus=Lus10013818.g ID=Lus10013818.BGIv1.0 annot-version=v1.0 ATGAGCAATGGAGGTGAAGCGAGTACACCGGGAAGATTGAAAGCGGATGAATTCGGATATGCGGTCGCCAGAAAGGCAGTAGCTCAGGTCTGCGAAAATT TTGGCTTCGACGGCTCAAAGGAGTCGGCTTTGGATGCTCTGACTGACGTCACCCTCCGGTACCTCCGCGACTTGGGAAAGACGGCGAGCTCCAACGCCAA CTTATGCGGCAGAACGGAATGCACAATCTTCGACGTGGTTAGAGGTTTGGAAGATATTGGTTCAACTCAGGGATTTCCAGGTGCATATAACTCTAGCGGT TGTCTTGTTAGTTCTGGCACCATTAGAGAGCTGGTTGATTATGTAGGTTCTAATGAAGAGATCCCCTTTGCACAACCGGTGCCTCAGTTCCCCATTGTTA GAGCTAGCAAGTTGATTCCTAGTTTTCAGAAATTGAACGAAACCCCTCCTGGGAAGCATGTTCCTGATTGGTTGCCAGCACTTCCGGATCAGCACACGTA TGTTCATACCCCGATGTGGAACGAGAGGGATTCGGATCCGAGAGCTGATAAGATTGAGCAAGCTAAGCAAAGGAGGAAGGCCGAGACGGCATTGTTGAAC CTTCAGCAGAGGCTGGTGAGTAATAACTCAGCAGCAGGTGCTGGATCTTCAGGTATAGTAAGAAATGCTGAGGAGTTGGGTGTAGCTGATGGAAATCCTT TTCTAAGGAAAGCTTTGAATCCAGGGGAGAAAGATGTGTCTCTGGTTACAGTACCGAATAAGCTGGCCAATCATGTTTCTATAATGGAGGCATTTGCTCC AGCGATTGAGGGGGCGAAAGAAGTAGGGGTTAATGAAGAAGAAGAAGAAGAAGGTGGGGATGGTGAGAAGAAGTTGCTTCCAGAGAAGAGGCCTAGTGTG AGTTTTAGTTTGAAGACTAGGAAGAAATTGTTAGCTGAAGAGTCATTAGATTTGCACATTTCGAAGAAGAGCCAAGGAAGAAGAACAGGGGGGCCGAATT CGTTAGGAAAGGTCGATGAGAGGGATGATAAGAAGAGGAGAGCAGAGTATATACTTAGGCAGTCCATGGAAAAACCACAAGAATTCACTCAGTTGTAA
AA sequence Show only first row Show all	>Lus10013818 pacid=23159468 polypeptide=Lus10013818 locus=Lus10013818.g ID=Lus10013818.BGIv1.0 annot-version=v1.0 MSNGGEASTPGRLKADEFGYAVARKAVAQVCENFGFDGSKESALDALTDVTLRYLRDLGKTASSNANLCGRTECTIFDVVRGLEDIGSTQGFPGAYNSSG CLVSSGTIRELVDYVGSNEEIPFAQPVPQFPIVRASKLIPSFQKLNETPPGKHVPDWLPALPDQHTYVHTPMWNERDSDPRADKIEQAKQRRKAETALLN LQQRLVSNNSAAGAGSSGIVRNAEELGVADGNPFLRKALNPGEKDVSLVTVPNKLANHVSIMEAFAPAIEGAKEVGVNEEEEEEGGDGEKKLLPEKRPSV SFSLKTRKKLLAEESLDLHISKKSQGRRTGGPNSLGKVDERDDKKRRAEYILRQSMEKPQEFTQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	0	1
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	1.0	0.9259
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	1.4	0.8762
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10015741 [exp]	2.4	0.8553
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10009299 [exp]	3.7	0.8210
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	6.5	0.8373
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	6.7	0.8395
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10020931 [exp]	7.1	0.7642
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10001866 [exp]	8.0	0.8472
AT1G06270			Pentatricopeptide repeat (PPR)...		Lus10017675 [exp]	8.5	0.8155
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10037330 [exp]	8.9	0.8133

Compare expression of checked genes

Lus10013818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.