Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09870 92 / 8e-25 SAUR-like auxin-responsive protein family (.1) AT2G28085 60 / 2e-12 SAUR-like auxin-responsive protein family (.1) AT4G38860 51 / 4e-09 SAUR-like auxin-responsive protein family (.1) AT1G56150 50 / 7e-09 SAUR-like auxin-responsive protein family (.1) AT1G76190 51 / 8e-09 SAUR-like auxin-responsive protein family (.1) AT5G20810 51 / 8e-09 SAUR-like auxin-responsive protein family (.1.2) AT3G60690 51 / 1e-08 SAUR-like auxin-responsive protein family (.1) AT1G20470 50 / 1e-08 SAUR-like auxin-responsive protein family (.1) AT2G46690 50 / 1e-08 SAUR-like auxin-responsive protein family (.1) AT4G34770 49 / 2e-08 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026531 [exp] 264 / 1e-92 AT3G09870 89 / 7e-24 SAUR-like auxin-responsive protein family (.1) Lus10004014 [exp] 214 / 6e-73 AT3G09870 101 / 1e-28 SAUR-like auxin-responsive protein family (.1) Lus10030263 [exp] 206 / 7e-70 AT3G09870 100 / 4e-28 SAUR-like auxin-responsive protein family (.1) Lus10001398 [exp] 140 / 2e-43 AT3G09870 97 / 9e-27 SAUR-like auxin-responsive protein family (.1) Lus10023012 [exp] 137 / 2e-42 AT3G09870 97 / 5e-27 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 78 / 3e-19 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1) Lus10021436 [exp] 74 / 2e-17 AT2G28085 117 / 6e-35 SAUR-like auxin-responsive protein family (.1) Lus10026532 [exp] 73 / 2e-17 AT3G09870 64 / 3e-14 SAUR-like auxin-responsive protein family (.1) Lus10016129 [exp] 73 / 5e-17 AT2G28085 115 / 4e-34 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092400 [exp] 131 / 2e-40 AT3G09870 108 / 8e-32 SAUR-like auxin-responsive protein family (.1) Potri.006G125100 [exp] 129 / 1e-39 AT3G09870 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.010G226400 [exp] 85 / 5e-22 AT2G28085 51 / 3e-09 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 56 / 1e-10 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.005G237200 [exp] 54 / 3e-10 AT1G75580 164 / 5e-54 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 55 / 5e-10 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.002G024300 [exp] 53 / 7e-10 AT1G75580 170 / 2e-56 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 52 / 2e-09 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.004G164300 [exp] 52 / 3e-09 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 52 / 4e-09 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10013819 pacid=23159457 polypeptide=Lus10013819 locus=Lus10013819.g ID=Lus10013819.BGIv1.0 annot-version=v1.0 ATGACTATGTTCACCATCAACGACGACGAAAGCATCCGAGGGTTGATGCTGCTGAAGTTCTTCACAAGAAAGCTGCAAAGGACACTCATGATGATGACAT CCAGATTAGGAGGGCAGAAGCTGCAGAAAACCAGCACTACTGGAGAGTATGAAGAAGACAAAGAAGGGATGAAGGAAGTTCCAAACGACGTTAAGAGAGG GCAGTTTGCCGTGACAGCAACCAAAGGTGGGAAGCCAAAGAGGTTCATTGTTGAGTTGGATGACCTCAATGACCCTGATTTCCTCACCTTGCTCGAACTG TCTGAGGACAAATTCGGGTTCGGCCAGGCAGGTGTGCTTGAGGTCCCTTGCTACCCTCTGGAGCTTCAGAAGGTTCTACGAGGTGGCAAAATCAGAAGAG CAAGTGCTCAATGGTAG
AA sequence Show only first row Show all	>Lus10013819 pacid=23159457 polypeptide=Lus10013819 locus=Lus10013819.g ID=Lus10013819.BGIv1.0 annot-version=v1.0 MTMFTINDDESIRGLMLLKFFTRKLQRTLMMMTSRLGGQKLQKTSTTGEYEEDKEGMKEVPNDVKRGQFAVTATKGGKPKRFIVELDDLNDPDFLTLLEL SEDKFGFGQAGVLEVPCYPLELQKVLRGGKIRRASAQW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09870			SAUR-like auxin-responsive pro...		Lus10013819 [exp]	0	1
AT3G57930			unknown protein		Lus10031806 [exp]	1.0	0.9399
AT5G64250			Aldolase-type TIM barrel famil...		Lus10006545 [exp]	1.7	0.9246
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	3.7	0.9265
AT1G60060			Serine/threonine-protein kinas...		Lus10018736 [exp]	6.9	0.9205
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	8.9	0.9198
AT3G22250			UDP-Glycosyltransferase superf...		Lus10035452 [exp]	9.2	0.8626
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Lus10024288 [exp]	10.5	0.8509
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10003436 [exp]	10.8	0.8505
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	11.0	0.9067
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	11.8	0.9080

Compare expression of checked genes

Lus10013819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.