Plant FIBer expression Database

Lus10013820 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03370 107 / 7e-30 acylphosphatase family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026533
[exp]
256 / 2e-88 AT5G03370 141 / 6e-43 acylphosphatase family (.1)
Lus10023010
[exp]
38 / 0.001 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G093000
[exp]
125 / 3e-36 AT5G03370 116 / 9e-33 acylphosphatase family (.1)
Potri.006G124966
[exp]
111 / 2e-32 AT5G03370 107 / 3e-31 acylphosphatase family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0622 Acylphosphatase PF00708 Acylphosphatase Acylphosphatase
Representative CDS sequence
>Lus10013820 pacid=23159413 polypeptide=Lus10013820 locus=Lus10013820.g ID=Lus10013820.BGIv1.0 annot-version=v1.0
ATGTCAATGCCTCTGACTGTAAGCATCAGAACGAGAGTTCTACTATCTCGCTCGAAGATTCCCGAGCCATGGCGTATGGGTGTTGCTAGACTCTCCTTTC
TCACTAGCCTGGGATCTCCTTCACTTTCTCCTCTTCCCCTTCACAATCGTTTTCTTCCATCTCATCCTCCCCTAATTTGCTCTTCCTTTCAATCTCGCCT
TCGACCTTCTCTGGTCATCGCTGCCTCCATGACTTCTTCCGCTTCCTCCGATCTCAAGACGGTGAGGGTTGTGGTCAAAGGCAGGGTGCAAGGAGTGTTC
TACAGGGACTGGACGGTGGCTAGCGCGACGGAATTAGAGCTTAAAGGCTGGGTGAGGAATCGGAGGGATGGCACCGTCGAGGCCTTGTTCTCCGGGGAGT
CCGGTAAGGTCGAGAAGATGGAACAGAGGTGCCGCCGTGGCCCTCCTTCTGCCGTTGTAACTGGGTTCGACGTTTTCCCCTGCGATGAAGACCCCGGAAC
TGGATTTGATCGTAAACCAACGGTTTGA
AA sequence
>Lus10013820 pacid=23159413 polypeptide=Lus10013820 locus=Lus10013820.g ID=Lus10013820.BGIv1.0 annot-version=v1.0
MSMPLTVSIRTRVLLSRSKIPEPWRMGVARLSFLTSLGSPSLSPLPLHNRFLPSHPPLICSSFQSRLRPSLVIAASMTSSASSDLKTVRVVVKGRVQGVF
YRDWTVASATELELKGWVRNRRDGTVEALFSGESGKVEKMEQRCRRGPPSAVVTGFDVFPCDEDPGTGFDRKPTV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G03370 acylphosphatase family (.1) Lus10013820
[exp]
0 1
AT2G38050 DWF6, DET2, ATD... DWARF 6, DE-ETIOLATED 2, 3-oxo... Lus10021127
[exp]
9.2 0.8447
AT3G21740 APO4 ACCUMULATION OF PHOTOSYSTEM ON... Lus10039659
[exp]
12.2 0.8222
AT2G45630 D-isomer specific 2-hydroxyaci... Lus10041393
[exp]
13.4 0.8233
AT3G48700 ATCXE13 carboxyesterase 13 (.1) Lus10012073
[exp]
14.2 0.8437
AT3G24500 MBF1C, ATMBF1C multiprotein bridging factor 1... Lus10034592
[exp]
19.4 0.8296
AT1G76060 EMB1793 EMBRYO DEFECTIVE 1793, LYR fam... Lus10005621
[exp]
22.5 0.8142
AT2G32120 HSP70T-2 heat-shock protein 70T-2 (.1.2... Lus10041207
[exp]
25.8 0.8215
AT5G57360 LKP1, FKL2, ADO... ZEITLUPE, LOV KELCH PROTEIN 1,... Lus10025470
[exp]
26.2 0.8258
AT5G64430 Octicosapeptide/Phox/Bem1p fam... Lus10010752
[exp]
27.9 0.8171
AT2G47180 ATGOLS1 galactinol synthase 1 (.1) Lus10031434
[exp]
29.8 0.8185

Lus10013820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.