Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03450 443 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) AT5G03750 64 / 1e-11 unknown protein AT5G37230 50 / 1e-06 RING/U-box superfamily protein (.1) AT1G51930 48 / 2e-06 RING/U-box superfamily protein (.1) AT5G37270 49 / 3e-06 RING/U-box superfamily protein (.1) AT3G58720 48 / 1e-05 RING/U-box superfamily protein (.1.2) AT5G37250 45 / 3e-05 RING/U-box superfamily protein (.1) AT2G03000 47 / 4e-05 RING/U-box superfamily protein (.1) AT3G07200 45 / 4e-05 RING/U-box superfamily protein (.1.2) AT5G41430 44 / 8e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026534 [exp] 749 / 0 AT5G03450 317 / 3e-101 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030464 [exp] 44 / 0.0002 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10012819 [exp] 44 / 0.0002 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122800 [exp] 621 / 0 AT5G03450 473 / 6e-160 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G228000 [exp] 380 / 8e-124 AT5G03450 357 / 8e-115 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G148300 [exp] 45 / 7e-05 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.014G139400 [exp] 45 / 8e-05 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.016G058300 [exp] 45 / 0.0002 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.008G087200 [exp] 43 / 0.0003 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 43 / 0.0003 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.006G193600 [exp] 43 / 0.0005 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.009G091200 [exp] 42 / 0.0007 AT1G49850 108 / 3e-28 RING/U-box superfamily protein (.1) Potri.001G082200 [exp] 42 / 0.0007 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10013821 pacid=23159503 polypeptide=Lus10013821 locus=Lus10013821.g ID=Lus10013821.BGIv1.0 annot-version=v1.0 ATGGCGGAACCCTACAGCTCCGATGAAGAGCTGGCGGAACCGGTAGTAGAATTATCAGGAGGCAGCTCCGACTCCGAAGAAGAGGAATCTGACTCAGGAG ATGAGGAAGCGGAGGAAGACTTCATTCCAATTGATGTCTCGCCACCTAGGGTTTCAGACCACGATGTTCCTTCAAGTTCCAGTAGGGTAAGGAGTGTTCA TGTCGAAGACGAGACAACTAAGAGAAGAAGAGTGGATGATGAGGTATGCTCGTCGAATGCGGACGAAGGCAGACATGGTTCTCAAGGTAGCCAGTGGAAT CGTGCTGAAATCGAAGGCTTGTTTTGCTCAATCTGCATGGAAGCCTGGACTAGTGAAGGACATCACCACATCTGCTGTCTTCCTTGCGGCCATCTCTTTG GGTTGTCTTGCATTGAAAAATGGTTAAAACAAAAGCGAAGTTCTGGCAAGTGCCCCCAATGCAACAGGAAATGCACATTGAAAGATATGAGGAAACTTTT TGCGCCTAGGATTGCTGTGGTCGACGAAGAATCACAAAAGAGAATTCATTTTCTCGAGGCTAAGTGTGCTTCTCTCGAAAAGAAGGGAGCTGATTGGTAC AAGAAAGAAGCTGCATGGCGTAAGCAGGAGACTGAATTGCAAGGGAAAGTTAAACTGCTTAAGGAGAGGACAGCTTCCTTGGAGCGTTTATTAGATGATT TGCAGAACAAACCGACAGGATTACTCGCTGCTTCTAGAGGCCAACATGTACCATTTGTAGCTAACTTGTATGGTATCTTGTTCATCGCGCTTCATTTACT GGTCCTTGTAGATAATCCTGCTACTTCAAACTTCAGCATGCAAGGCTTTTCTGGTAGCTTTGAGTTACAGGGGGAGCTAAATGTGGAGGGTGGACGCTTA TTTGACATAAATATCTCAAGTCAAACATTATTAGTTGCAAGAAGACCACCTCAGGTCGGTGGATCTCATGTTACCAAGATAAGTTTGATGCCTCCACATG GAACCGACAACATTGTTCTACCATCTAGCACAGGCACGATCAAAGACTTGCATTTTTGCCCACGTAACCCAAGCACTGTGCTTTTTGCTTCGTTGGGGAA AATGTTATCCATTATGAGTTTGGACAGCAACAACATCACCCTTTCATATGAGCTGCCATATCCTGCTTGGTCATGCTCGTGGGATCTAAACAGTCCACAT CACCTTTATGCCGGCTTACAGAATGGCATGTTGTTGGCATTTGACATTCGCCAAACAGCACAGCCTCTGGAGTCTAGGCTGGGGCTTTCAAGGAATCCAA TTCATACAATACATTCACTTGAATATAATGGTAATTTACCCCCAAATGTTAGAGCAGTGCTGTCTGCTTCCTCTCTGGGTATATGCCAGTGGACTTTTGA CCGTGCTGAAGAAAGGCCATCTTTAGTTCCCGTCGCAACAAATCAAGGAGTCTGCATATCACTAGCTAAGTCTCCCAGCACCGATGACAGTGTTGTATCG TATCGTCCCAAGGTTAACACGCCCAATGAAGCTGGGTCATCACAAACATTTGCCAGCCCCTCCCAAAATGCAGGACAAGGAACACAGGGTTCCCATCTTC ACTTGAAGAGAACTGGGAGCAGTTATGAAATGTTCGGTAATACAAGTGCCATTGTAAGTGACATTAGACTCCCTCGTACAGTCATAGTACCAAAACAGAA GGAGCATCCTTCGCTGTTTGTTTCGGGGGACGAAGCTTCACAAAGCCTGCTGTTGCAAGAGTTGCCCTCATTAGCAGTTGCTCAGCGACTTAAACCCCAG AGGAGCTTCATCTCTGACGTAAAATATGCTGGCAACCACAGCCAACGCGTACTTGGGTGTTTAAGTGAGACTACGTTGCAACTTTTCACCAGCAAGACGT GA
AA sequence Show only first row Show all	>Lus10013821 pacid=23159503 polypeptide=Lus10013821 locus=Lus10013821.g ID=Lus10013821.BGIv1.0 annot-version=v1.0 MAEPYSSDEELAEPVVELSGGSSDSEEEESDSGDEEAEEDFIPIDVSPPRVSDHDVPSSSSRVRSVHVEDETTKRRRVDDEVCSSNADEGRHGSQGSQWN RAEIEGLFCSICMEAWTSEGHHHICCLPCGHLFGLSCIEKWLKQKRSSGKCPQCNRKCTLKDMRKLFAPRIAVVDEESQKRIHFLEAKCASLEKKGADWY KKEAAWRKQETELQGKVKLLKERTASLERLLDDLQNKPTGLLAASRGQHVPFVANLYGILFIALHLLVLVDNPATSNFSMQGFSGSFELQGELNVEGGRL FDINISSQTLLVARRPPQVGGSHVTKISLMPPHGTDNIVLPSSTGTIKDLHFCPRNPSTVLFASLGKMLSIMSLDSNNITLSYELPYPAWSCSWDLNSPH HLYAGLQNGMLLAFDIRQTAQPLESRLGLSRNPIHTIHSLEYNGNLPPNVRAVLSASSLGICQWTFDRAEERPSLVPVATNQGVCISLAKSPSTDDSVVS YRPKVNTPNEAGSSQTFASPSQNAGQGTQGSHLHLKRTGSSYEMFGNTSAIVSDIRLPRTVIVPKQKEHPSLFVSGDEASQSLLLQELPSLAVAQRLKPQ RSFISDVKYAGNHSQRVLGCLSETTLQLFTSKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03450			Transducin/WD40 repeat-like su...		Lus10013821 [exp]	0	1
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	5.7	0.8693
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	12.5	0.8559
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	13.2	0.8085
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	13.4	0.8639
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	17.7	0.8529
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10035713 [exp]	22.4	0.7833
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	23.8	0.8378
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	24.9	0.8556
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	25.3	0.8368
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	28.5	0.8449

Compare expression of checked genes

Lus10013821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.