Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36870 429 / 9e-153 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G44990 359 / 3e-125 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT1G10550 208 / 8e-66 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT1G32170 200 / 4e-62 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G14130 198 / 6e-62 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT1G14720 199 / 7e-62 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT5G57550 195 / 8e-61 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT2G01850 195 / 3e-60 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT3G23730 191 / 3e-59 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT3G25050 190 / 6e-59 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026535 [exp] 536 / 0 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10001396 [exp] 487 / 2e-175 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10023009 [exp] 482 / 1e-173 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 377 / 4e-132 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 372 / 4e-130 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10037377 [exp] 372 / 4e-130 AT2G36870 422 / 9e-150 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 371 / 1e-129 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026536 [exp] 358 / 3e-124 AT2G36870 402 / 1e-141 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013823 [exp] 280 / 3e-95 AT2G36870 301 / 7e-104 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122900 [exp] 454 / 1e-162 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 446 / 2e-159 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G006600 [exp] 374 / 6e-131 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.014G115000 [exp] 211 / 9e-67 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.014G146100 [exp] 202 / 1e-63 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.003G097300 [exp] 202 / 7e-63 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.009G163850 [exp] 199 / 1e-62 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.011G077320 [exp] 198 / 7e-62 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.006G071200 [exp] 196 / 2e-61 AT4G25810 379 / 3e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.001G136100 [exp] 197 / 6e-61 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10013822 pacid=23159481 polypeptide=Lus10013822 locus=Lus10013822.g ID=Lus10013822.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCCTCCCTCATTCTTCTTATTCTTTTGGCTCTTTCTTCATTCATCGCCATTGTTAATGCCCGGCCGCCCCGAACCGGGTTCCGACCCA GCTTCAGGTTTAGATCATTCCCCTTCTACAAAGGGTATAATACCCTTTGGGGCCAGTCCCACCAAAGAGTGGACAGCAATGGAGTCACCATTTGGCTTGA TAAAACTTCAGGAAGTGGGTTCAAGTCAGTGAAGCCATTTCGGTCTGGCTATTTCGGTGCCTCGGTCAAGCTCCAACCTGGCTACACTGCTGGAGTTAAC ACTGCCTTCTATCTTTCAAACAGTGAAGCTCACCCAGGGAGCCATGATGAGGTGGACATTGAATTCCTTGGCAAGACATTCGACGAGCCTTACACTCTAC AGACCAACGTTTACATTAGGGGAAGCGGGGATGGCAAAATCATTGGCAGAGAGATGAAGTTCCATTTATGGTTCGATCCCACCAAGAATTTCCACCACTA TGCCATCATCTGGAATCCCAGAGAAATCATATTCCTAGTGGACGATGTGCCAATAAGGAGGTACCAAAAGAAAAGCGCCGCAACATTCCCAATGAGGCCC ATGTGGGTATATGGCTCGATATGGGATGCCTCGGCTTGGGCTACTGACGATGGCAAGTACAAAGCCGATTATCGGTACCAACCCTTTGTCGCTAACATGA AGAATTTCAAGGCCACAGGCTGCACCGCCTACTCGCCGAGGTGGTGCAGGGCGCCCACCGCCTCACCTGACCGGTCCGGTAAGCTAACGAGGCAGCAATA CAATGCCATGAATTGGGTTCAAAAGTACCATATGGTGTACAATTATTGTTCGGACAAAGCAAGAGACCATTCGAAGACCCCCGAATGTTGGTTATGA
AA sequence Show only first row Show all	>Lus10013822 pacid=23159481 polypeptide=Lus10013822 locus=Lus10013822.g ID=Lus10013822.BGIv1.0 annot-version=v1.0 MASSSSLILLILLALSSFIAIVNARPPRTGFRPSFRFRSFPFYKGYNTLWGQSHQRVDSNGVTIWLDKTSGSGFKSVKPFRSGYFGASVKLQPGYTAGVN TAFYLSNSEAHPGSHDEVDIEFLGKTFDEPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKNFHHYAIIWNPREIIFLVDDVPIRRYQKKSAATFPMRP MWVYGSIWDASAWATDDGKYKADYRYQPFVANMKNFKATGCTAYSPRWCRAPTASPDRSGKLTRQQYNAMNWVQKYHMVYNYCSDKARDHSKTPECWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013822 [exp]	0	1
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026535 [exp]	1.0	0.9316
AT1G05070			Protein of unknown function (D...		Lus10035288 [exp]	2.8	0.8151
AT3G54880			unknown protein		Lus10013824 [exp]	4.6	0.7552
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10030632 [exp]	12.2	0.7415
AT2G20690			lumazine-binding family protei...		Lus10017000 [exp]	14.8	0.8019
					Lus10019699 [exp]	17.2	0.7246
					Lus10012740 [exp]	19.0	0.7756
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	22.4	0.8095
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	29.6	0.7543
AT4G24760			alpha/beta-Hydrolases superfam...		Lus10042075 [exp]	29.8	0.7454

Compare expression of checked genes

Lus10013822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.