Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36870 261 / 6e-88 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G44990 234 / 2e-77 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT1G10550 155 / 1e-46 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT1G32170 153 / 3e-45 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT2G01850 147 / 4e-43 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT3G25050 145 / 9e-43 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT1G14720 145 / 3e-42 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT4G18990 142 / 8e-41 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT4G14130 139 / 3e-40 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 137 / 9e-40 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026536 [exp] 363 / 1e-127 AT2G36870 402 / 1e-141 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10023009 [exp] 265 / 3e-89 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10001396 [exp] 264 / 5e-89 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 261 / 5e-88 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026535 [exp] 261 / 1e-87 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 249 / 4e-83 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10037377 [exp] 246 / 9e-82 AT2G36870 422 / 9e-150 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 240 / 9e-80 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 240 / 1e-79 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122900 [exp] 261 / 7e-88 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 255 / 9e-86 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G006600 [exp] 239 / 2e-79 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.003G097300 [exp] 161 / 2e-48 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.001G136100 [exp] 160 / 5e-48 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.014G115000 [exp] 149 / 5e-44 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.009G163850 [exp] 147 / 1e-43 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.010G102300 [exp] 146 / 1e-42 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.005G201200 [exp] 145 / 1e-42 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 144 / 2e-42 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10013823 pacid=23159458 polypeptide=Lus10013823 locus=Lus10013823.g ID=Lus10013823.BGIv1.0 annot-version=v1.0 ATGCAGCTGTCGAATAATGAGGCTCATCCAGGGAATCATGATGAGGTGGACCTCGAGTTTCTGGGGAGGACACTGAAGGAGCCTTACACAGTGCAGACGA ATGTGTACGTAAGGGGAAGTGGAGATGGAGGTGATATCATTGGGAGAGAAGCAAGGTTTCATTTGTGGTTTGATCCTACAAAACACTTCCACCATTATGC CCTTCTTTGGAATCCTAAAGAGATCATATTTCTAGTGGACGACATTCCAATAAGAAGATACCAAAAGAAAAGTGATTCTACATTTCCAACAAGGCCAATG TGGGTTTACGGCTCAATATGGGATGCCTCCGACTGGGCCACGGACGACGGAAAATACAGAGCAAATTACAAATACCAACCTTTTGTTTCAAAGTACAGGA GATTCGTGACATCCGGTTGCCCCAACGATGCTCCGCCGAGTTGCCCGCCGGTATCGGCATCGCCTCATCGTTCCGGCGGGCTGACGGTGCGGCAGATCAC GGCAATGAGATGGGTGCAGAAACACCGAATGGTGTATCACTATTGCATGGACACAACAAGGGACCATTCCCTCACCCCAGAGTGCAAGAAATTTGTGACA AAGATGCGTAAAAATGGTCCACCGATTGGATAG
AA sequence Show only first row Show all	>Lus10013823 pacid=23159458 polypeptide=Lus10013823 locus=Lus10013823.g ID=Lus10013823.BGIv1.0 annot-version=v1.0 MQLSNNEAHPGNHDEVDLEFLGRTLKEPYTVQTNVYVRGSGDGGDIIGREARFHLWFDPTKHFHHYALLWNPKEIIFLVDDIPIRRYQKKSDSTFPTRPM WVYGSIWDASDWATDDGKYRANYKYQPFVSKYRRFVTSGCPNDAPPSCPPVSASPHRSGGLTVRQITAMRWVQKHRMVYHYCMDTTRDHSLTPECKKFVT KMRKNGPPIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	2.8	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	3.0	1.0000
					Lus10002413 [exp]	3.7	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	4.9	1.0000
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10023602 [exp]	5.0	1.0000
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10028908 [exp]	6.9	1.0000
					Lus10027374 [exp]	7.9	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	8.0	1.0000
					Lus10033373 [exp]	8.1	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029383 [exp]	8.4	1.0000

Compare expression of checked genes

Lus10013823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.