Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56570 285 / 1e-91 SET domain-containing protein (.1) AT3G07670 56 / 2e-08 Rubisco methyltransferase family protein (.1) AT1G14030 55 / 6e-08 Rubisco methyltransferase family protein (.1) AT3G55080 52 / 3e-07 SET domain-containing protein (.1.2) AT1G24610 42 / 0.0006 Rubisco methyltransferase family protein (.1) AT5G14260 42 / 0.001 Rubisco methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026538 [exp] 579 / 0 AT3G56570 505 / 2e-175 SET domain-containing protein (.1) Lus10029539 [exp] 65 / 3e-12 AT3G56570 45 / 7e-06 SET domain-containing protein (.1) Lus10012309 [exp] 58 / 7e-09 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10036780 [exp] 57 / 1e-08 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10035757 [exp] 49 / 6e-06 AT5G17240 485 / 1e-168 SET domain group 40 (.1) Lus10016087 [exp] 47 / 1e-05 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10040345 [exp] 46 / 3e-05 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10021783 [exp] 43 / 0.0004 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135700 [exp] 397 / 5e-136 AT3G56570 446 / 9e-153 SET domain-containing protein (.1) Potri.008G047400 [exp] 62 / 2e-10 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.004G081400 [exp] 58 / 5e-09 AT5G17240 543 / 0.0 SET domain group 40 (.1) Potri.008G090500 [exp] 58 / 7e-09 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.014G169300 [exp] 53 / 2e-07 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10013825 pacid=23159460 polypeptide=Lus10013825 locus=Lus10013825.g ID=Lus10013825.BGIv1.0 annot-version=v1.0 ATGAGCCGGCGATTGAGGGCTTTTGTGCGATGGATGAAGTCACAGGGCTTCCAGTGGAGTGAGGCAATGGAGTTCGTTGGGAGTTCAGAAGACGAAGGAG GAATATCGGTGAAGGCAGTGAGTGATTTGAAGGAAGGGGAGGTGGTGGCCACCATTCCGAAGGCTGCGTGCCTCACCGTCAAGAACAGCGAAGCTTGCGA ATTGATTGAATCAGCTGGTTTGGGTGGGTGTTTGGGACTTTCTGTGGCTCTTATGTTTGAGAGGAGCTTAGGGGAGTCGTCTCCCTGGGCTGGGCATCTT CAGCTGTTGCCGGAGAGCGAGAGTGTCCCTTTGCTTTGGACTATTGATGAGATTGATCGATTCCTCCAAGGCACCGAGCTTCACAAGGCAGTTAAAGAAG ACAAAGGTCTTGTTTATGAGGACTGCGAAGAGAACATTTTGCCCCTAGTTCATCAACTTCCTTCCAGTGTTGACGCAAAATATTTCGGGGTTGATCAGTA TTTTGCCGTGAAGAGTCTTGTCTCGTCAAGAGCTTTTGAGATAGATGATTACCATGGACATGGAATGGTGCCTTTGGCAGATTTATTTAATCATAAGACT GGAGCTGAGGATGTGCACTTCACACATTCTGAATATGATGATGATGGTGATGATAGCAACACCAGCGATTTATCCGATGAAGATGCTGGTGACGAGGAGC CATCAAGTGATCTTGAATCCCCTTCAATCAATGGGGACCATCCAACGGTGTTGGAGATAATCATGGTGAAAGATGTAAAATGTGGAGCTGAGATTTTCAA CACATACGGGTTGGTGGGTAATGCTGCGTTGCTGCACAGATACGGATTTACAGAGCCAGACAATGCATTTGACATTGTCAATATTGATATGGATTTGGTA CTCCAATGGACCTCATCATTGTTCACCGACCGGTATAGTAGATCAAGACTATCTCTGTGGAGAAGTTTAGAATACTCAGGATGTGTTAGCGGGGAAACAG AATACTTTGAAATCTCAAATGATGGTGAACCACAGATCGAGTTATTGATCTTGTTATACATAATATTATTGCCAGAGGAAACTTACCTTAAACTGGATCT CCTAGTTTCAACCACAACTAAGAAAAGAAGAATCGGTAAGCATGTTCTTCTCAGCTGA
AA sequence Show only first row Show all	>Lus10013825 pacid=23159460 polypeptide=Lus10013825 locus=Lus10013825.g ID=Lus10013825.BGIv1.0 annot-version=v1.0 MSRRLRAFVRWMKSQGFQWSEAMEFVGSSEDEGGISVKAVSDLKEGEVVATIPKAACLTVKNSEACELIESAGLGGCLGLSVALMFERSLGESSPWAGHL QLLPESESVPLLWTIDEIDRFLQGTELHKAVKEDKGLVYEDCEENILPLVHQLPSSVDAKYFGVDQYFAVKSLVSSRAFEIDDYHGHGMVPLADLFNHKT GAEDVHFTHSEYDDDGDDSNTSDLSDEDAGDEEPSSDLESPSINGDHPTVLEIIMVKDVKCGAEIFNTYGLVGNAALLHRYGFTEPDNAFDIVNIDMDLV LQWTSSLFTDRYSRSRLSLWRSLEYSGCVSGETEYFEISNDGEPQIELLILLYIILLPEETYLKLDLLVSTTTKKRRIGKHVLLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56570			SET domain-containing protein ...		Lus10013825 [exp]	0	1
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038205 [exp]	13.6	0.8543
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10008264 [exp]	14.1	0.8430
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10029226 [exp]	18.9	0.8445
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016632 [exp]	20.4	0.8141
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10014285 [exp]	30.3	0.8339
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	31.3	0.8150
AT1G15780			unknown protein		Lus10015321 [exp]	34.2	0.8315
AT5G42785			unknown protein		Lus10002541 [exp]	49.7	0.8255
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10022627 [exp]	54.4	0.7989
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	59.4	0.8222

Compare expression of checked genes

Lus10013825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.